PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G460200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 447aa    MW: 47007.4 Da    PI: 8.7016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G460200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05201224123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg++  r+ +L+ H+ + H
  Sevir.9G460200.1.p 201 FPCKVCGEVLARPQLLELHQAMrH 224
                         89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.621201229IPR007087Zinc finger, C2H2
PROSITE patternPS000280203224IPR007087Zinc finger, C2H2
SuperFamilySSF563997.58E-12226275No hitNo description
Gene3DG3DSA:3.90.228.105.8E-7236445IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563997.58E-12303445No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAGGSGSSLL RGFLSLFFLL FIHIGHAGCC FSSGSAARAR EEDEAEDADA DGKVGGAGGG  60
SNKRRKISPL IFSPAASSSA ATNDSVRARR RHVSSVAASL RLYLHRIFSS SGARDATVAG  120
REEEEAVTTT VSSPLARSLP PQPSASVVLS TPSSPCASSS PFMSPLSVRS LSATPVPSSP  180
QKLLQASRQS SRSFAARGDV FPCKVCGEVL ARPQLLELHQ AMRHSLSELT DLDSSTNIIR  240
MIFLAGWKPG VGGEAPIVVR RVLRIHHNPR ALARFEEYRD LVRARAARRC AGEGGAAAAA  300
VEERCVADGN ERLRFHCSTM LCSLGGGGAC GSPYCCVCST LRHGFAGKQA DVDGIATYAS  360
AWAAHASLPD DVEREFAFLQ VRRAMLVCRV VAGRVGRGAD DDKVAYDSMV PVRGVGGGRA  420
TGGDDVELLV FNPRAVLPCF VILYSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G460200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352050.0AC135205.4 Oryza sativa Japonica Group chromosome 3 clone OJ1012B02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984691.10.0uncharacterized protein LOC101780280
TrEMBLK4A9W60.0K4A9W6_SETIT; Uncharacterized protein
STRINGSi035672m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-33C2H2 family protein