PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G471000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 82aa MW: 9178.76 Da PI: 6.2539

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G471000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.5e-09	2	43	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 W+ E e++ +a + +G + W+++a+ +g gRt+ + + ++ Sevir.9G471000.1.p 2 EWSDSENERFERALATYGIDAWERVAAAVGGGRTADDARRHF 43 7**********************************9988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	11.448	1	51	IPR017884	SANT domain
CDD	cd00167	3.87E-6	2	43	No hit	No description
SuperFamily	SSF46689	2.58E-10	2	54	IPR009057	Homeodomain-like
Pfam	PF00249	9.3E-7	2	43	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-6	2	46	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MEWSDSENER FERALATYGI DAWERVAAAV GGGRTADDAR RHFDHLQEDV GDIESRGRAH 60 DARDARNGNR NNRGRANRPQ T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G471000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984988.1	1e-51	protein RADIALIS-like 3
TrEMBL	K4AHE5	3e-50	K4AHE5_SETIT; Uncharacterized protein
STRING	Si038302m	5e-51	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230

Link Out ? help Back to Top
Phytozome	Sevir.9G471000.1.p