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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sevir.9G479600.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 317aa MW: 35110.8 Da PI: 10.6602 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sevir.9G479600.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 337.7 | 3e-103 | 1 | 316 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd..................... 57
mdddgs rn+g+ye k nlglqlmss++ +rd+k+ + ++ a +++++ ++++
Sevir.9G479600.3.p 1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSSVPpDRDTKPllpnggnflqhHGHHNAPHQHQHQHHTQHphhprgggggsgapsgmptep 88
9*****999******988...************99**************998334444444444443333555666*************** PP
GAGA_bind 58 ....maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeea 144
m+f++++++l+ + +++++++ + +++p + ++++ + + + +pq +d++ + +ee + ++ + e +++
Sevir.9G479600.3.p 89 pavhMDFVRNEAWLHPSQ-HHHQHHH--------Q----HQHPRQPKMMQPQAQQQ-P--QPQPQPQDPPPP--KEESMPQP-LIEDHPVL 160
***************922.2222211........1....12232222222221111.1..123444444444..55555555.55568888 PP
GAGA_bind 145 kekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
k+++ +kkrq++++pk++k kk+kk ++++++ ++++ +r + ++k++++v+ng++lD s++P+PvCsCtG+++qCY+WG+GGWqSaCC
Sevir.9G479600.3.p 161 KNEPPVKKRQQGRQPKSPKPKKPKK-VAAPQENGAPNKPAPRPRGPRKTVGMVINGIDLDLSRIPTPVCSCTGTPQQCYRWGAGGWQSACC 250
88999999*****************.66777888877777*************************************************** PP
GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
Sevir.9G479600.3.p 251 TTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKFVTIR 316
*****************************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYETVKG NLGLQLMSSV PPDRDTKPLL PNGGNFLQHH GHHNAPHQHQ 60
HQHHTQHPHH PRGGGGGSGA PSGMPTEPPA VHMDFVRNEA WLHPSQHHHQ HHHQHQHPRQ 120
PKMMQPQAQQ QPQPQPQPQD PPPPKEESMP QPLIEDHPVL KNEPPVKKRQ QGRQPKSPKP 180
KKPKKVAAPQ ENGAPNKPAP RPRGPRKTVG MVINGIDLDL SRIPTPVCSC TGTPQQCYRW 240
GAGGWQSACC TTSISTYPLP MSTKRRGARI AGRKMSQGAF KKVLEKLAGE GYNLANPIDL 300
KTFWAKHGTN KFVTIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
