PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G480400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 241aa    MW: 25776.3 Da    PI: 8.0001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G480400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-152369148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        + +WT++Ed  l + v+ +G+ +W++I++ ++ gR +k+c++rw ++l
  Sevir.9G480400.1.p 23 KPAWTKDEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWCQHL 69
                        579*****************************.***********9986 PP
2Myb_DNA-binding482.8e-1578120347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++eEde++++ +++++++ W+tIa  ++ gR+++ +k+rw+++
  Sevir.9G480400.1.p  78 PFSPEEDEKIAHFHRLYPNK-WATIAGFLP-GRSDNAIKNRWNSV 120
                         79******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4531873IPR017930Myb domain
SMARTSM007172.2E-152271IPR001005SANT/Myb domain
SuperFamilySSF466899.17E-2922117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-182271IPR009057Homeodomain-like
PfamPF002499.4E-152369IPR001005SANT/Myb domain
CDDcd001672.48E-142569No hitNo description
PROSITE profilePS5129417.95774125IPR017930Myb domain
SMARTSM007173.3E-1275123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1878121IPR009057Homeodomain-like
CDDcd001679.02E-1278121No hitNo description
PfamPF002497.8E-1478121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAVPNEAAVV VGVQPVPAAA TKKPAWTKDE DAALREQVRA HGPQNWAAIS AALPGRNPKS  60
CRLRWCQHLT PGVDPARPFS PEEDEKIAHF HRLYPNKWAT IAGFLPGRSD NAIKNRWNSV  120
LGKQQPQHHQ QQRAAAVPFL GLSDGTLPLF PLTSGDVRVF GRSVPVLRRP PPGDAGVDLS  180
GACLKLFPLA TGDLVGGNDS GEAAEMDVDC SADDQTVTEM TLWPSTMAAF KAMVQAVRAP  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A3e-27271386127MYB3
3zqc_D3e-27271386127MYB3
3zqc_G3e-27271386127MYB3
3zqc_J3e-27271386127MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G480400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987088.11e-173transcription factor MYB1
TrEMBLA0A368SVI81e-171A0A368SVI8_SETIT; Uncharacterized protein
STRINGSi039876m1e-167(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-34myb domain protein 77