PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G485600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 229aa    MW: 24528.4 Da    PI: 7.7931
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G485600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-18116170256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sevir.9G485600.2.p 116 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 170
                         788899***********************************************98 PP
2HD-ZIP_I/II126.31.4e-40116204190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +
  Sevir.9G485600.2.p 116 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQRELQELR-S 204
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-1894173IPR009057Homeodomain-like
SuperFamilySSF466895.85E-19110173IPR009057Homeodomain-like
PROSITE profilePS5007117.232112172IPR001356Homeobox domain
SMARTSM003897.8E-16114176IPR001356Homeobox domain
CDDcd000863.19E-14116173No hitNo description
PfamPF000461.3E-15116170IPR001356Homeobox domain
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PfamPF021834.8E-11172205IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.4E-23172215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAQEDVHLDD AGLALGLSLG GGGGASDAAR QGTCSRLSRE PRALEPSLTL SMPDEATATG  60
SGGCGGGPSH SVSSLSVAGV KRERVEEADG ERASSTAAAA RACGAGAEDD DDGSTRKKLR  120
LTKEQSALLE DRFKEHSTLN PKQKVALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF  180
LKRCCESLTE ENRRLQRELQ ELRSLKFAAP PAAASHHFFN PFTHSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120TRKKLRL
2164172RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G485600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357541e-173BT035754.2 Zea mays full-length cDNA clone ZM_BFb0081O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985119.11e-154homeobox-leucine zipper protein HOX19 isoform X2
SwissprotA2XE762e-82HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL42e-82HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A368STQ01e-152A0A368STQ0_SETIT; Uncharacterized protein
STRINGPavir.J25440.1.p1e-112(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-42homeobox from Arabidopsis thaliana