PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G525300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 544aa    MW: 57881.2 Da    PI: 7.4833
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G525300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14260319155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sevir.9G525300.1.p 260 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDREEKAARAYDLAALKYWG 319
                         789******************544454478446*************************98 PP
2AP246.31e-14364413355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sevir.9G525300.1.p 364 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 413
                         9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-16260329IPR016177DNA-binding domain
CDDcd000187.72E-20260329No hitNo description
PROSITE profilePS5103218.795261327IPR001471AP2/ERF domain
SMARTSM003802.9E-28261333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15261328IPR001471AP2/ERF domain
PfamPF008474.6E-11261319IPR001471AP2/ERF domain
PRINTSPR003679.4E-6262273IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18362423IPR016177DNA-binding domain
CDDcd000181.97E-23362423No hitNo description
PROSITE profilePS5103219.203363421IPR001471AP2/ERF domain
SMARTSM003802.9E-33363427IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18363421IPR001471AP2/ERF domain
PfamPF008471.4E-9364413IPR001471AP2/ERF domain
PRINTSPR003679.4E-6403423IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDMNNGWLGF SLSPSAGRGG YGDGGGGGGS GSGDGEGSCS SPAAASPLVA MPLQADGVPL  60
QYSSTTPDWE HAAEAKGPKL EDFMSITCSN KSSSSSSSLY DSCNHAADQA KYHEVHDLQP  120
FSGGSYFHDH GHGIGLGINM NAPPSNGFPD HHHHQFLPHH GEYFLGTPAN PSPTPGAMQS  180
MPPMYNAAAA AASAGGVVGG SMSISGIKSW LREAMYVPPE RSAALSLSVA DVPAAEPPQL  240
LPAPMPVARK PAQTFGQRTS QFRGVTRHRW TGRYEAHLWD NTCRKEGQTR KGRQVYLGGY  300
DREEKAARAY DLAALKYWGP STHINFPLSH YEKELEEMKH MSRQEFIAHL RRNSSGFSRG  360
ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF  420
DISKYDVKRI CASTHLIGND AACRRSPTRA LPDAPAPAEL PSSQGGGAAS DNSDTSDGHR  480
GAHLLHGLQY AQQQPHPMKF EAGESSGGGT GWMAAAAAAA AASRPVAGVP SVHQLPVFAL  540
WND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G525300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985511.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK4A8670.0K4A867_SETIT; Uncharacterized protein
STRINGSi035073m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-117AP2 family protein