PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G557300.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 699aa MW: 78185.3 Da PI: 6.441

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G557300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.1	1.7e-28	379	429	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Sevir.9G557300.2.p 379 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 429 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.006	368	449	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-26	381	429	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	4.9E-24	597	681	No hit	No description
SuperFamily	SSF54277	8.83E-22	598	680	No hit	No description
SMART	SM00666	5.4E-22	600	683	IPR000270	PB1 domain
PROSITE profile	PS51745	22.045	600	683	IPR000270	PB1 domain
CDD	cd06407	1.10E-40	601	682	No hit	No description
Pfam	PF00564	1.2E-15	601	681	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MPRRRRARHD HAEGQLQCRD REHMQCSQGR DVLLPGTPIP EEVDLRSTDV SSDPHANVSL 60 NVADTSYRAI VPEIIDVLRT VCERHELPLA QTWIPCICQA KRGSRHSDEK FKYCVSTVDE 120 ACYIRDPNVT GFHQACSDHH LFRGEGVVGR AFGTNEPCFA TDVTAYSKAQ YPLSHHAKLF 180 NLKAAVAIRL RSIRTGSLDY VLEFFLPVDC IESEEQRAML NSLSITIQQT CYTLRVVSLK 240 ELVDEGSFET STVTPAEFYE KPIHENLDEV CSNIEVPVRT TSLETSEEVT SWIASLVDAQ 300 SKGVKEMDGD LPFGFSKQED EGFSVTAGWH TPPVLGPKGT IFSGFKHHEE YEVKEPICSR 360 HPSPSNLDKT VEKRRTKMEK TVSLEELRKH FAGSLKEAAK NLGVCPTTLK RICRQHGINR 420 WPSRKIKKVG HSLKKLQMVI DSVHGAEGTV QLSSLYENFT KTTWSERELQ GDGTYPLSEQ 480 KGHLEPSVPD RQCEGRFTSH TSGSNSMSPS CSQSSNSSHG CSSGSKSQQN GSAPQLAVKQ 540 EVFMEENQSS TLLKAASHAE LQMFTEERPV TLPRSESQML LSELKPVENM SGMQKSKPES 600 LKIKAMYGEE RCIFRLQPSW GFEKLKEEIV KRFSIGQEMY VDLKYLDDES EWVLLTCDAD 660 LLECIDVYKS SSAQTVRILV NANVQPVLGP SFGQTGLS*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MPRRRRARHD HAEGQLQCRD REHMQCSQGR DVLLPGTPIP EEVDLRSTDV SSDPHANVSL  60
NVADTSYRAI VPEIIDVLRT VCERHELPLA QTWIPCICQA KRGSRHSDEK FKYCVSTVDE  120
ACYIRDPNVT GFHQACSDHH LFRGEGVVGR AFGTNEPCFA TDVTAYSKAQ YPLSHHAKLF  180
NLKAAVAIRL RSIRTGSLDY VLEFFLPVDC IESEEQRAML NSLSITIQQT CYTLRVVSLK  240
ELVDEGSFET STVTPAEFYE KPIHENLDEV CSNIEVPVRT TSLETSEEVT SWIASLVDAQ  300
SKGVKEMDGD LPFGFSKQED EGFSVTAGWH TPPVLGPKGT IFSGFKHHEE YEVKEPICSR  360
HPSPSNLDKT VEKRRTKMEK TVSLEELRKH FAGSLKEAAK NLGVCPTTLK RICRQHGINR  420
WPSRKIKKVG HSLKKLQMVI DSVHGAEGTV QLSSLYENFT KTTWSERELQ GDGTYPLSEQ  480
KGHLEPSVPD RQCEGRFTSH TSGSNSMSPS CSQSSNSSHG CSSGSKSQQN GSAPQLAVKQ  540
EVFMEENQSS TLLKAASHAE LQMFTEERPV TLPRSESQML LSELKPVENM SGMQKSKPES  600
LKIKAMYGEE RCIFRLQPSW GFEKLKEEIV KRFSIGQEMY VDLKYLDDES EWVLLTCDAD  660
LLECIDVYKS SSAQTVRILV NANVQPVLGP SFGQTGLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G557300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698188.1	0.0	protein NLP1 isoform X1
Refseq	XP_012698189.1	0.0	protein NLP1 isoform X1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A368SW96	0.0	A0A368SW96_SETIT; Uncharacterized protein
STRING	Si034133m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-138	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G557300.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]