PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G578400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 280aa MW: 29550.1 Da PI: 8.4672

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G578400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.8	4.5e-23	16	62	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ Sevir.9G578400.1.p 16 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 62 7999*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.552	1	84	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-21	17	62	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MASNAQVQQP KPTKVSLSYE EISKLFSLPI AEAASILGVC TSVLKRICRS HGIVRWPYRK 60 LVSGKAGDDT KGPEREKAKE LLELSKIAKQ KALSPSGSSI VSSSTSQGAA KSQQGSSKAG 120 QVSVSPPAGK QNASPSLAHG SQTKAIPGYM DDFKYGFPSS GLPCETMKWW GGSSDTDCEL 180 TKDGNREAHG EASKGMTDDD ELDWGADEGE AEADGAVTAE ASGQLCSLTR KAVDDGRKLL 240 NGGTRRGREF SRLNKRQKVA LAQVFGASLP DAVLLVFNE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G578400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004986052.1	0.0	uncharacterized protein LOC101760145
TrEMBL	A0A368SX65	0.0	A0A368SX65_SETIT; Uncharacterized protein
TrEMBL	K4ACP6	0.0	K4ACP6_SETIT; Uncharacterized protein
STRING	Si036653m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.9G578400.1.p