PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.J017100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 247aa    MW: 27005.3 Da    PI: 4.8274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.J017100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.4e-172577156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       s y+GV  ++ +grW+A+I     ng +k+ +lg fgt eeAa+a++ a+++l+g+
  Sevir.J017100.1.p 25 SEYRGVAKHHHNGRWEARIGY--ANG-KKYLYLGIFGTQEEAARAYDLAALELRGH 77
                       569***************644..366.8**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.95E-212586No hitNo description
SuperFamilySSF541713.92E-172586IPR016177DNA-binding domain
SMARTSM003807.0E-252690IPR001471AP2/ERF domain
PfamPF008473.2E-132677IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-182684IPR001471AP2/ERF domain
PROSITE profilePS5103217.4772684IPR001471AP2/ERF domain
PRINTSPR003679.3E-52738IPR001471AP2/ERF domain
PRINTSPR003679.3E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQRMTREAYL ATLRRRSSCF SRGASEYRGV AKHHHNGRWE ARIGYANGKK YLYLGIFGTQ  60
EEAARAYDLA ALELRGHAAI TNFDISSYAD YLQPPPVSKA QARSALKPKA EPVDEAPLLP  120
TKTATGWTTP LLTPKPEPED EEVEPLVAAL PPGLVLRDVD HAIAEMPPGP VLRDADDVDH  180
AIAEILPALG MDPADFEARY PARALGWLPD DDHHQLRALP LPDAGRFEDD IETLFDAPGS  240
AGPGQGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.J017100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493532e-50EU949353.1 Zea mays clone 402937 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970326.21e-178AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A368RCF71e-175A0A368RCF7_SETIT; Uncharacterized protein
TrEMBLK3XQN51e-176K3XQN5_SETIT; Uncharacterized protein
STRINGSi004222m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.21e-37ERF family protein