PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00001.1_g00035.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 111aa MW: 12435.7 Da PI: 3.9432

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00001.1_g00035.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	45.2	2.7e-14	3	50	53	100
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +reda+ss+vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ +e Sme2.5_00001.1_g00035.1 3 NREDAVSSMVYEATARLRDPVYGSVGIISSLQKHIFHLQSELNEVSAE 50 79****************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.127	1	51	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-12	3	47	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MDNREDAVSS MVYEATARLR DPVYGSVGII SSLQKHIFHL QSELNEVSAE ALSLKTQLSD 60 ASTSSFLEDS QKQIEQNAYA NSESNDLQLL LPEAADYCFQ ETDQFLLPQP Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	6e-76	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	6e-76	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015160565.1	6e-53	PREDICTED: LOB domain-containing protein 1-like
TrEMBL	M1CN84	1e-51	M1CN84_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400071132	2e-52	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-17	LOB domain-containing protein 25