PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00001.1_g00050.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 866aa    MW: 95277.5 Da    PI: 6.6995
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00001.1_g00050.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-19306405198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F
  Sme2.5_00001.1_g00050.1 306 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVIF 390
                              99**************************666667778***************9989999999***9.******************* PP

                              EE-SSSEE..EEEEE- CS
                       B3  83 kldgrsefelvvkvfr 98 
                              ++++  +++lv+++++
  Sme2.5_00001.1_g00050.1 391 SRID-PGGKLVMGFRK 405
                              *887.78878888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-30303412IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21303407IPR015300DNA-binding pseudobarrel domain
CDDcd100174.37E-24304405No hitNo description
PROSITE profilePS5086311.321306407IPR003340B3 DNA binding domain
PfamPF023622.3E-16306405IPR003340B3 DNA binding domain
SMARTSM010191.7E-21306406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MGSMICMNEL CRATTSSEWK KGWGFKSGGF AKLCYNCGSA FENLIFCETF HSDESGWREC  60
RSCRKHIHCG CVASKYLYEY LDYGGVACLN CARHLDGHSV RPIQIPGDDL PNVALGSKST  120
EPLGVENKMD ENDFDRRRLM PTNEPGQLFQ TPRNDKKPET MLPIGNNIGA SLFGKPDNER  180
PSQGVKDMYE SINQPSLNFS LGTPIGPSSS GQPFLGGDVE GREQSKASPF QQGQRARHIL  240
PKPPKPSSTS ASESIKVMTS QARIARPPAE GRGGRNQLLP RYWPRITDQE LQQLSGDLKS  300
TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPINQSEG LPIRIQDIKG KEWTFQFRFW  360
PNNNSRMYVL EGVTPCIQNM QLQAGDTVIF SRIDPGGKLV MGFRKATNNV DMQDSQTPNL  420
PNGNGSAETS FSGMPDNFPN GGRTSDDSVN RQVPMSEKKK ARNIGSKNKR LLMYADDAME  480
LRITWDEIQE LLRPSPTAKP KIIKIEDAEF EEYEEPPVFG KRTIFTARSS GPALANASAK  540
VWIRSNGLNV TVVLNGVDCQ CMYFFLLSGL VRTIFGTLEG KHKSECNSAT PNLVASYYDI  600
GSLCSCAAPD EISPRELEAL FRVGKDPKRR KLVENNEDCE ASGLDALATL AVLGDNIGDV  660
GETSVGATTK HPRHRAGCSC IVCIQPPSGK GKHHSTCKCN VCATVKRRFK TLMMRKKKKQ  720
SEREAELAQA KDQVAPKDEL EPDGMPSGIE LLQMTHSENE HMNHSENERN SNGDQVEEFG  780
TGKGQLDLNC DPNRDDDMLA EATAGMSMTS LVNATNLPLE YLTQNRRENL SNPLLSQAAG  840
ESEGHHPDNG FGKTADVEME SKGGEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-702844132131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1624630KDPKRRK
2705716KRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267260.0AC226726.1 Solanum lycopersicum chromosome 6 clone C06HBa0057D21, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350883.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
RefseqXP_006350884.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
RefseqXP_006350885.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like
TrEMBLA0A3Q7H4D90.0A0A3Q7H4D9_SOLLC; Uncharacterized protein
STRINGSolyc06g082520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2