PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00003.1_g00046.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 808aa    MW: 87386.1 Da    PI: 9.2114
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00003.1_g00046.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-163079255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykGVr++  +g+WvAeIr+p  ng  +r +lg+f+  ++Aa a++aa++kl+g
  Sme2.5_00003.1_g00046.1 30 TYKGVRQRT-WGKWVAEIREP--NG-GARLWLGTFDNSYDAAVAYDAAARKLYG 79
                             69****999.**********9..33.5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.36E-162989No hitNo description
PROSITE profilePS5103221.0083087IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-193088IPR016177DNA-binding domain
SMARTSM003802.8E-333093IPR001471AP2/ERF domain
PfamPF008472.7E-103079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-273088IPR001471AP2/ERF domain
PRINTSPR003671.9E-73142IPR001471AP2/ERF domain
PRINTSPR003671.9E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MSSTSKKLMQ ATSRKGCMRG KGGPENASCT YKGVRQRTWG KWVAEIREPN GGARLWLGTF  60
DNSYDAAVAY DAAARKLYGV EAKLNLPHLY NNPSETHGQN SRPFTIMASV PVSAPVPVPL  120
PTPAPAPAPA PPTLTLALSP ALSPAPPPTP VPTPVYNVAP PSTWSMGNDS LLCFNYDFGI  180
NNFSTDDPTA FNLIDINQTD YHSEFVEKNN NNNNQISQGL GGEMWRDLKM NLPEIDDSSI  240
WEEAKATTSF QEAVNDPGIC GFNLDDGLNF PPWSTSTPKD VSKEGEKDEE TNNKSKETTP  300
ARERFTESII FKESIFLNNI HYIPSMTSAL CDGVKFRLRK HRDFGHFAWR QVAQVVRRCW  360
WGPGRILCPK ECETGDFGYF SWVLAHGFWC CLGFRAKNPE KSYGWIGDEP GKQPRYPSGV  420
GEGLAKIPKN LYGWVGDEPD SGADWGSGQK LPKNNTGGWA TSPARGPGGP AALAGEAAQV  480
AWLRWRGPGG ILWPKEGETC DFDHFPLGFQ VNTLEKSYGW VRNESNKWSR WPSGVGGSLP  540
SVPGKDSLKI IRVGRGRARQ AAQPTNFGAA WSFEQKFPKT HTDRSRTSPT SGPGGLARAW  600
YPDGVGGGLV GFSSPRKEKQ PTDSGASWCS GQIFSKIHTG GLEMSPASGL DSPAALAGAW  660
ILWPKKGEIG DFGHFAWVLA HEFLSFLVFR AKIPKNSYGW VGDEPGKRSR WLGDVGGGLI  720
GFYGPRKAKQ GTSPISGPSD SAVLAGACSE QRFPKNHTGG SGMSSASGPS GLAASGQSGR  780
AKIPKKSYGW VGNELGKWPK WPGGIAGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-153192668ATERF1
3gcc_A8e-153192668ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755168e-52HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-35ERF family protein