PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00004.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 207aa MW: 21865.7 Da PI: 8.089

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00004.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.5	4e-37	43	131	6	93
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgk 89 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt++++a+++ +aes s+s++s+++ Sme2.5_00004.1_g00003.1 43 TTTKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTGTIPATQVttTAESVPLSQSQPSAQS 128 689**************************************************************888643334334444333332 PP TCP 90 aaks 93 + +s Sme2.5_00004.1_g00003.1 129 Q-PS 131 2.22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-31	43	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.396	45	99	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGSEMVVSGA IAGTGNGSAN SEPNDKNALV VVPKKKHSLS VSTTTKDRHT KVNGRGRRVR 60 MPALCAARVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTGTIPATQV TTTAESVPLS 120 QSQPSAQSQP SALAPLTRAT PVSGFPTGGG FFSMTPQSQP NCRLDLCQPS LEFPGNAYRH 180 MPFTALLLQP VTAEDGEEKV AGEDEKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ496337	1e-109	GQ496337.1 Solanum lycopersicum TCP transcription factor 19 (TCP19) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233821.2	1e-126	TCP transcription factor 19
Swissprot	Q9SJK7	2e-42	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A3Q7HYI7	1e-125	A0A3Q7HYI7_SOLLC; Uncharacterized protein
TrEMBL	G3BGV9	1e-125	G3BGV9_SOLLC; TCP transcription factor 19
STRING	Solyc09g008030.1.1	1e-126	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	5e-33	TCP family protein