PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00007.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 707aa MW: 80875.8 Da PI: 7.416

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00007.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79	8.5e-25	28	115	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 +fY+eYAk+ GF + k +s++sk n+e+++++f C ++g+++++++ ++r++ ++gCka+++vk++ +gkw+++++ +eH Sme2.5_00007.1_g00009.1 28 EFYKEYAKSEGFGTAKLNSRRSKANNEFIDAKFSCIRYGNKQQSDDV----INPRPSPKIGCKASMHVKRRLsTGKWYIHSFIKEH 109 6*************************************9998877....9***************99********* PP FAR1 86 nHelap 91 nHel p Sme2.5_00007.1_g00009.1 110 NHELLP 115 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-22	28	115	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-22	228	320	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.534	508	544	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-8	517	542	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-7	519	546	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MESTVGLGNS NVEVRDDMEF DSLEAAYEFY KEYAKSEGFG TAKLNSRRSK ANNEFIDAKF 60 SCIRYGNKQQ SDDVINPRPS PKIGCKASMH VKRRLSTGKW YIHSFIKEHN HELLPAQVHF 120 FRSHRNVDPL NNDAEVRQKN MLASVSEQYG AYQFSGNLDN LFRNQNDRGR SLVLEKGDAR 180 VLLQLFVHMQ GENPKFFYAL DLNEENRLRN VFWVDAKGVD SYSRFGDVVS FDTTYFTNKY 240 KIPLVLFIGA NHHVQPTLLG CALIADETER TFLWLMRTWC LAMGGQGPRI LLSDQNDNIK 300 AAVGATLPDT KHYFSLWSIL EKIPRRFHYL CMWHDKFMAK IWKCIYKSWT EEQFEHRWWK 360 LIEKFSLRED EWVQSLYDYR KLWVPTFMRD VSFASLSMAS RTESLNSYFD KYVQSEMSLR 420 DFIGQHKLIL EDWYEQEAKA NFDAWHEMPA LETPSPVEKQ MLLMYTHEIF KKCQVELLGT 480 TACHLKKVSE NGTSITHAVK DLVANQDFMV EWDAPKSDLY CSCRLFEYKG YLCKHALVVL 540 QMSGVFSIPF KYILQRWSNV ATSGHSISEG LDDARAKVRR LNDLCRQAVI LGEEGSLTQE 600 SYNIAVGAIE GALRQCQGNT LAANLKSGSS ATLAAQVDEV CPARELVPNS TAAQTSKGSK 660 RADPGSEREN DNNSSNKKGK APLEPEIGNI AQGVFNQMTG APWKGLP

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MESTVGLGNS NVEVRDDMEF DSLEAAYEFY KEYAKSEGFG TAKLNSRRSK ANNEFIDAKF  60
SCIRYGNKQQ SDDVINPRPS PKIGCKASMH VKRRLSTGKW YIHSFIKEHN HELLPAQVHF  120
FRSHRNVDPL NNDAEVRQKN MLASVSEQYG AYQFSGNLDN LFRNQNDRGR SLVLEKGDAR  180
VLLQLFVHMQ GENPKFFYAL DLNEENRLRN VFWVDAKGVD SYSRFGDVVS FDTTYFTNKY  240
KIPLVLFIGA NHHVQPTLLG CALIADETER TFLWLMRTWC LAMGGQGPRI LLSDQNDNIK  300
AAVGATLPDT KHYFSLWSIL EKIPRRFHYL CMWHDKFMAK IWKCIYKSWT EEQFEHRWWK  360
LIEKFSLRED EWVQSLYDYR KLWVPTFMRD VSFASLSMAS RTESLNSYFD KYVQSEMSLR  420
DFIGQHKLIL EDWYEQEAKA NFDAWHEMPA LETPSPVEKQ MLLMYTHEIF KKCQVELLGT  480
TACHLKKVSE NGTSITHAVK DLVANQDFMV EWDAPKSDLY CSCRLFEYKG YLCKHALVVL  540
QMSGVFSIPF KYILQRWSNV ATSGHSISEG LDDARAKVRR LNDLCRQAVI LGEEGSLTQE  600
SYNIAVGAIE GALRQCQGNT LAANLKSGSS ATLAAQVDEV CPARELVPNS TAAQTSKGSK  660
RADPGSEREN DNNSSNKKGK APLEPEIGNI AQGVFNQMTG APWKGLP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006342979.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A3Q7FW40	0.0	A0A3Q7FW40_SOLLC; Uncharacterized protein
STRING	Solyc03g121630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]