PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00007.1_g00022.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 117aa    MW: 12817.5 Da    PI: 10.026
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00007.1_g00022.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.24e-13556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             + +WT eE++ l+ +v+++G+g+Wk I r         +R+  ++k++w++ 
  Sme2.5_00007.1_g00022.1  5 KVKWTSEEEDALKAGVAKHGTGRWKNILRDPEfapvlINRSNIDLKDKWRNM 56
                             579*********************************999***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.485161IPR017930Myb domain
SuperFamilySSF466897.9E-17259IPR009057Homeodomain-like
SMARTSM007172.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-15557IPR009057Homeodomain-like
PfamPF002495.2E-10555IPR001005SANT/Myb domain
CDDcd116602.91E-21657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MGNPKVKWTS EEEDALKAGV AKHGTGRWKN ILRDPEFAPV LINRSNIDLK DKWRNMCIYT  60
AAQGSKDKSR VARARPVAIN TLVPSTTQSL PAITSGFENE AIDDSPKSPQ EGSNAPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342962.16e-64PREDICTED: single myb histone 4-like
TrEMBLA0A0V0I3M81e-63A0A0V0I3M8_SOLCH; Putative ovule protein
TrEMBLA0A0V0I8561e-63A0A0V0I856_SOLCH; Putative telomere repeat-binding factor 4-like
STRINGPGSC0003DMT4000063692e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-30MYB_related family protein