PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00010.1_g00015.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 524aa    MW: 59282.8 Da    PI: 8.365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00010.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17165255199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f k l++s+v++  ++ lp +f++ h ++ ++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l++
  Sme2.5_00010.1_g00015.1 165 FMKLLVRSHVGSCFWMGLPVPFCKIH-LP-RQDTPVILESENGEEYEIKYIAEKTG----LSAGWRKYAAAHKLVEGDVLVFQLVE 244
                              899********************666.33.56778***************777777....***********************987 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                               ++f  +v v+r+
  Sme2.5_00010.1_g00015.1 245 PTRF--KVYVIRA 255
                              6666..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-19159256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-22159256IPR015300DNA-binding pseudobarrel domain
CDDcd100177.78E-25163254No hitNo description
SMARTSM010195.7E-23165256IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338165256IPR003340B3 DNA binding domain
PfamPF023625.1E-15165255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MKIKVVHRSE PPNQERVFYP DMPKKEVFDE EHENQQLGNQ EPEPEPDSGI PKLSNGNLSL  60
VDASIPINSP TPSTQTPISS LLGKRRRKPK EMIDQISTIP FRKKRVFKKQ PQSNNGVVDA  120
GARSISTKQE RATADGSGSA TQMKSAIIIR AEEFLSNIGN EYPCFMKLLV RSHVGSCFWM  180
GLPVPFCKIH LPRQDTPVIL ESENGEEYEI KYIAEKTGLS AGWRKYAAAH KLVEGDVLVF  240
QLVEPTRFKV YVIRANDLKE VDGALSLLNL DVPTKQSDAE GTNANNIKKR QKKSLPLTVV  300
QRRKRKEDLS KQLVPLEAQS GNDSDEVASE ILEGSRSSGL AVNFRDIKSL EEFHILVNGV  360
CIDSELPEHI RRKYYELCCS KDAFLHDRLL QGLHCKVVAG MIFEVVNIAD MVRACKLTTP  420
RKEFDKWDKS LKSFELLGMN VGFLRTRLRW LLSLAFDSEG ASDTKRYWEA KKEWSRAEDE  480
IRNLEMKLGE LKQVSGKYGA DVEALKSKAE SYELMFQGEV NAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287305KKRQKKSLPLTVVQRRKRK
2301306RRKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339907.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLM1BAE90.0M1BAE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-36B3 family protein