PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00011.1_g00048.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 258aa    MW: 29616.1 Da    PI: 9.6469
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00011.1_g00048.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA91.88.5e-29110166158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQy++Il+RRq Rak+  ++k+  +srkpylheSRh+hA+rR+R  gGrF
  Sme2.5_00011.1_g00048.1 110 EEPMYVNAKQYHGILRRRQLRAKAVLQQKV-VRSRKPYLHESRHRHAMRRARDGGGRF 166
                              69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-32108169IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.67109169IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.7E-26111166IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-22112134IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-22143166IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAQLRTTKDM ILDRKEWRSR IRAEDSDSKE GKHVEFMPPI MGENLRAANQ FEMMAPSSIA  60
FKSYPYSEVP QYSGSNVTVA CGEPMVNQNM ERLSTVHHNG RMILPVEVKE EPMYVNAKQY  120
HGILRRRQLR AKAVLQQKVV RSRKPYLHES RHRHAMRRAR DGGGRFLNTK KKNQSTTTNN  180
NNATSSSKGK SSLDSDSSQN YLLNYEHDIG SSNNSNSLEG FQFQAGIHDA TENLQLGCHY  240
QWNLNDNNHC NCMHSEHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-20110173265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150159RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-113HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249201.21e-142nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_010312079.11e-142nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A3Q7IKS31e-140A0A3Q7IKS3_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000210531e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.33e-28nuclear factor Y, subunit A1