PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00014.1_g00027.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 258aa    MW: 29617.1 Da    PI: 4.8666
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00014.1_g00027.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W + Ed+ll++++k+ G ++W++ ++  g+ R++k+c++rw +yl
  Sme2.5_00014.1_g00027.1 14 RGPWNKIEDDLLINYIKKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                             89******************************99************97 PP
2Myb_DNA-binding482.9e-1567110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w++
  Sme2.5_00014.1_g00027.1  67 RGNFTPQEEDAIIKLHQVLGNR-WSAIAAKLP-GRTDNEIKNIWHT 110
                              89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.46961IPR017930Myb domain
SuperFamilySSF466898.03E-2811108IPR009057Homeodomain-like
SMARTSM007172.3E-121363IPR001005SANT/Myb domain
PfamPF002499.1E-131461IPR001005SANT/Myb domain
CDDcd001673.05E-81661No hitNo description
PROSITE profilePS5129424.43962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1366114IPR001005SANT/Myb domain
PfamPF002498.9E-1467110IPR001005SANT/Myb domain
CDDcd001671.57E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRTPCCEKK GLKRGPWNKI EDDLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TPQEEDAIIK LHQVLGNRWS AIAAKLPGRT DNEIKNIWHT RLKKKMSDSQ  120
PQGTPKIKVE TSKSNEIFDA DTEPENSKDN SEISSPKTSI EIQQQPSSST LSSSSSEDSC  180
SNTNATSFES KDEIIWDNLL EVDDDIWSEV LWAPVDDNNL NLSLMEENYQ INSSFNDNWF  240
WDDLFTRSNE LMLELPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754452e-77HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755182e-77HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352742.11e-140PREDICTED: myb-related protein Myb4-like
SwissprotQ9LNC94e-73MYB13_ARATH; Transcription factor MYB13
TrEMBLM1BS181e-138M1BS18_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000516821e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-74myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]