PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00017.1_g00038.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SBP

Protein Properties

Length: 188aa MW: 21479.4 Da PI: 8.2232

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00017.1_g00038.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.6e-41	74	149	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqve+Ce+dl ak+y++rhkvC++h+kapvvlv+gl++rfCqqCsrfhelsefD +krsCr+rL +hnerrrk+ Sme2.5_00017.1_g00038.1 74 CCQVEKCEVDLDGAKKYYKRHKVCQIHAKAPVVLVAGLSRRFCQQCSRFHELSEFDGTKRSCRQRLVGHNERRRKT 149 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-31	72	136	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.445	72	149	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.32E-37	73	151	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-33	75	148	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MATQIHCRPM KNRAAITMDL VEEDGEFEEE EEEGTVLNEE SSHLKRKKLN LGKKKGKNSD 60 FGGGLGVVVQ VKHCCQVEKC EVDLDGAKKY YKRHKVCQIH AKAPVVLVAG LSRRFCQQCS 120 RFHELSEFDG TKRSCRQRLV GHNERRRKTP LAIELEDNQS KQINGEARPH MDMTLPNRNA 180 IYTDDISE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	75	148	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016579534.1	2e-74	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q38740	2e-39	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A1U8HGD4	5e-73	A0A1U8HGD4_CAPAN; squamosa promoter-binding-like protein 3
STRING	Solyc07g062980.2.1	2e-67	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	2e-36	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]