PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00018.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 187aa    MW: 21163.8 Da    PI: 10.109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00018.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000364971123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C + F ++  L  H++ H
  Sme2.5_00018.1_g00006.1 49 FSCNYCYRNFYSSQALGGHQNAH 71
                             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-64577No hitNo description
PROSITE profilePS5015710.9494976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDSQNQSAHK QENNGLILDL SLLCNWDLKP GDDQILKTSD HSETEHQVFS CNYCYRNFYS  60
SQALGGHQNA HKRERITTAK RKQSMDSVPI IRGSFHRSLG IEAHSMIHKP NISSNTFRAP  120
TIPSLYNTLS SGTWSRRRLD QFPAIGRPDG TARLNFGNMN KFPGGIGSHL KTNRQEELKK  180
LDLSLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576997.12e-89PREDICTED: zinc finger protein 3-like
SwissprotQ392621e-23ZFP3_ARATH; Zinc finger protein 3
TrEMBLA0A1U8H0L05e-88A0A1U8H0L0_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZC625e-88A0A2G2ZC62_CAPAN; zinc finger protein 3-like
STRINGPGSC0003DMT4000733301e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1593066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-23C2H2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Zhang A, et al.
    The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response.
    PLoS ONE, 2016. 11(12): p. e0168367
    [PMID:27977750]