PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00019.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 224aa    MW: 26280.3 Da    PI: 7.5913
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00019.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21.1e-14960148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                             +g+WT++Ed++lv +vk++G ++W+  a+  g    ++R++k+c++rw +yl
  Sme2.5_00019.1_g00005.1  9 KGPWTEQEDLQLVFYVKMFGDRRWDFLAKVSGlkvgLKRSGKSCRLRWVNYL 60
                             79************************************************97 PP
2Myb_DNA-binding55.41.4e-1766111148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+ T++E+ + ++++ ++G++ W++Ia++++ gRt++++k++w++++
  Sme2.5_00019.1_g00005.1  66 RGKLTPQEERQVIQLHSKYGNR-WSKIAEKLP-GRTDNEIKNYWRTHM 111
                              8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.947460IPR017930Myb domain
SuperFamilySSF466891.01E-287107IPR009057Homeodomain-like
SMARTSM007175.5E-12862IPR001005SANT/Myb domain
PfamPF002492.0E-13960IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-191067IPR009057Homeodomain-like
CDDcd001674.30E-81160No hitNo description
PROSITE profilePS5129427.76561115IPR017930Myb domain
SMARTSM007172.0E-1765113IPR001005SANT/Myb domain
PfamPF002492.0E-1666110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-2568114IPR009057Homeodomain-like
CDDcd001673.83E-1270111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVQEDQMRKG PWTEQEDLQL VFYVKMFGDR RWDFLAKVSG LKVGLKRSGK SCRLRWVNYL  60
NPALKRGKLT PQEERQVIQL HSKYGNRWSK IAEKLPGRTD NEIKNYWRTH MRKQAQNEKK  120
NIKASSSPSS SNSSNCSSSS TNSPVVELLQ VAGENKIYEG DDQNMMVYSM DEIWKEVESS  180
EEIETSNNLL PSTTWDHYCP DNSQWMTHDH YYFDNHQDFS FFTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2861151105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130443e-85BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165693.11e-115PREDICTED: transcription factor MYB48-like
SwissprotQ9LX821e-66MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A3Q7HWX11e-117A0A3Q7HWX1_SOLLC; Uncharacterized protein
STRINGXP_009798979.19e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-66myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]