PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00019.1_g00026.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 196aa    MW: 21721.8 Da    PI: 7.7918
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00019.1_g00026.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.44.5e-42351341100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q
  Sme2.5_00019.1_g00026.1  35 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARMRDPVYGSAGAICQLQKQ 120
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+a+la++++e
  Sme2.5_00019.1_g00026.1 121 VNELQAQLAKTQAE 134
                              **********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.95434135IPR004883Lateral organ boundaries, LOB
PfamPF031958.1E-4235132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MESSNTTITT TTPSSSGSIS PPRHSPSPPR VVATPCAACK ILRRRCAEKC VLAPYFPPND  60
PIKFTTAHRV FGASNIIKFL QELPEYQRAD AVSSMVYEAN ARMRDPVYGS AGAICQLQKQ  120
VNELQAQLAK TQAELINMQC QQANLMAFVY MEMGQTSPQQ PLDKFTNNTI HGTIQNNMTF  180
LDESNNFGTL LETLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-42331429118LOB family transfactor Ramosa2.1
5ly0_B1e-42331429118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-112HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079078.11e-119LOB domain-containing protein 1-like
SwissprotQ9LQR02e-69LBD1_ARATH; LOB domain-containing protein 1
TrEMBLM1AC131e-113M1AC13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000194101e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.18e-71LOB domain-containing protein 1