PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00022.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 252aa    MW: 28201.5 Da    PI: 10.3602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00022.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19114162355
                      AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  Sme2.5_00022.1_g00002.1 114 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 162
                              9*******.**********32....25**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-13113162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-29113170IPR001471AP2/ERF domain
SMARTSM003804.8E-32113176IPR001471AP2/ERF domain
PROSITE profilePS5103222.062113170IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21114171IPR016177DNA-binding domain
CDDcd000185.14E-20114171No hitNo description
PRINTSPR003672.8E-10114125IPR001471AP2/ERF domain
PRINTSPR003672.8E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MYNSNTQKAD PFFFPTEKPL YPNEPIHHNF YINNTNPLDP FWDNYSVSAK ENEKSPVLEG  60
IAAIVGEHVL FGNNNSNDNG SKNDDPVPIQ KRTCPAGKRN NNNNNNVPSV ERSYRGVRKR  120
PWGRWSAEIR DRIGRCRHWL GTFDTPEEAA RAYDAAARWL RGSKARTNFQ IPPVVPLPAS  180
PASTSSSSNS SLEIKKKKMN GGAFANINNK RKCSVVTSAE HLFSSTNHHV NGLRKGINVN  240
VELDLKLGFG KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-16101169271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-128HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069047.11e-107ethylene-responsive transcription factor ERF084
SwissprotQ9M8M52e-26ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A3Q7GHY91e-102A0A3Q7GHY9_SOLLC; Uncharacterized protein
STRINGSolyc03g117230.1.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-22ERF family protein