PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00030.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 789aa MW: 89824.4 Da PI: 7.8324

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00030.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.2	2.3e-12	137	180	48	91
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++k r +r+ ++t+Cka+l+vk++ dg+w ++++++eHnHe++p Sme2.5_00030.1_g00008.1 137 RKKGRINRSWSKTDCKACLHVKRRPDGRWFIHTFVKEHNHEIFP 180 467899***********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-9	136	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-13	267	323	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.212	510	546	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-8	511	545	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-6	521	548	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MVIDLVHTSA DHHKEKEDCG QHTCVRIEHA RGELCSTDGA SVTASKSVCV GIETAGTSWN 60 ERTSNGANVL PSADSLALNC YRNLDPHDGM EFDSKDDSTL FIFQMNVLIY GSKREPSASG 120 AEPVPSADAA GSNPVRRKKG RINRSWSKTD CKACLHVKRR PDGRWFIHTF VKEHNHEIFP 180 DWTSYPPGHR NIDLGKNDAD APHAIHGRKK KTYASMSRHS GVMKKVVKRK NDGTNSSPQS 240 FALNEGDVTK QCLRNVFWVD AKCRLDYDES KSTFIWLMRA WLRAMGGQVP KVILTDQDKT 300 LEEVIAEVLP DSRHCFCLWH VLSKIQEKLG DVIRQHEGFL SKFNKCILRS ATNELFEKRW 360 WKVVDRFDLR NDLWIKSLYE DRLRWVPTYM NKIFLAGMST MQRAESVSSL IDKCILCKTT 420 LKEFIDQYKK LLQEKFEGEA NADFETRHKQ PVLKSPSPFE KQMSTLYTHT IFKKFQVEVL 480 GVVACHPKKE NDDGETGTYR VQDFEVNQEF IVVWNERTFD TSCSCHLFEY NGFLCRHVMM 540 VLQLAGVHNI PSKYVLRRWT KGAKSREKTR QVTLVDSRVQ RYNDLCQRAF ELGDEGSLSQ 600 ESYNIVFSAL ENFLRACETV NDANLNESVP CSLPNQSLND LELFTASNTP RVSNRKNIAR 660 KEKEGQSGYG EPTVDYPFGS HSATQPMGHI YSRIPISDGY YSSPQMIQGE EQLNTNTQGY 720 ANHLNMLRLR QLNTLASIED GPYLSQARLH GQEQVYFRPA DAQSSLGVQD SLQESTVANT 780 ESLCSKNLS

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MVIDLVHTSA DHHKEKEDCG QHTCVRIEHA RGELCSTDGA SVTASKSVCV GIETAGTSWN  60
ERTSNGANVL PSADSLALNC YRNLDPHDGM EFDSKDDSTL FIFQMNVLIY GSKREPSASG  120
AEPVPSADAA GSNPVRRKKG RINRSWSKTD CKACLHVKRR PDGRWFIHTF VKEHNHEIFP  180
DWTSYPPGHR NIDLGKNDAD APHAIHGRKK KTYASMSRHS GVMKKVVKRK NDGTNSSPQS  240
FALNEGDVTK QCLRNVFWVD AKCRLDYDES KSTFIWLMRA WLRAMGGQVP KVILTDQDKT  300
LEEVIAEVLP DSRHCFCLWH VLSKIQEKLG DVIRQHEGFL SKFNKCILRS ATNELFEKRW  360
WKVVDRFDLR NDLWIKSLYE DRLRWVPTYM NKIFLAGMST MQRAESVSSL IDKCILCKTT  420
LKEFIDQYKK LLQEKFEGEA NADFETRHKQ PVLKSPSPFE KQMSTLYTHT IFKKFQVEVL  480
GVVACHPKKE NDDGETGTYR VQDFEVNQEF IVVWNERTFD TSCSCHLFEY NGFLCRHVMM  540
VLQLAGVHNI PSKYVLRRWT KGAKSREKTR QVTLVDSRVQ RYNDLCQRAF ELGDEGSLSQ  600
ESYNIVFSAL ENFLRACETV NDANLNESVP CSLPNQSLND LELFTASNTP RVSNRKNIAR  660
KEKEGQSGYG EPTVDYPFGS HSATQPMGHI YSRIPISDGY YSSPQMIQGE EQLNTNTQGY  720
ANHLNMLRLR QLNTLASIED GPYLSQARLH GQEQVYFRPA DAQSSLGVQD SLQESTVANT  780
ESLCSKNLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215455	0.0	AC215455.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0042O06, complete sequence.
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015159754.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X4
TrEMBL	A0A3Q7F0W4	0.0	A0A3Q7F0W4_SOLLC; Uncharacterized protein
STRING	Solyc02g068550.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein