PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00037.1_g00006.1
Common NameMADS1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24756.9 Da    PI: 9.3435
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00037.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+ey+s
  Sme2.5_00037.1_g00006.1  9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLFEYAS 59
                             79***********************************************86 PP
2K-box64.44.2e-2279145470
                    K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                              ++ +++++   e+++ e  kL ++ie Lq+++ h++G+dL++Lsl+eLq+Leq++++slk+iRskK 
  Sme2.5_00037.1_g00006.1  79 RNMNANDSDPKENWSVECPKLMSRIELLQKNITHYMGQDLDPLSLRELQSLEQEIDTSLKRIRSKKL 145
                              455557777899*****************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.156161IPR002100Transcription factor, MADS-box
CDDcd002651.54E-42277No hitNo description
SuperFamilySSF554551.96E-33292IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1785145IPR002487Transcription factor, K-box
PROSITE profilePS5129710.19289189IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRGRVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLFEYAST  60
DSSMESILER YERYSYAERN MNANDSDPKE NWSVECPKLM SRIELLQKNI THYMGQDLDP  120
LSLRELQSLE QEIDTSLKRI RSKKLKENEK TRPNSSGQNS ATFDVPPSHS HQLPNLTIGV  180
PFVGMNRDGS GQAHQYPGSN NNSSLMPRWM LGHVSNEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22175173MEF2 CHIMERA
6byy_B1e-22175173MEF2 CHIMERA
6byy_C1e-22175173MEF2 CHIMERA
6byy_D1e-22175173MEF2 CHIMERA
6bz1_A1e-22175173MEF2 CHIMERA
6bz1_B1e-22175173MEF2 CHIMERA
6bz1_C1e-22175173MEF2 CHIMERA
6bz1_D1e-22175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7274740.0KF727474.1 Solanum melongena cultivar Zi Chang anthocyanin MADS transcription factor (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064042.11e-127truncated transcription factor CAULIFLOWER A
SwissprotD7SMN66e-81FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A0A0QMQ51e-156A0A0A0QMQ5_SOLME; Anthocyanin MADS transcription factor
STRINGSolyc02g089210.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Zhang Y, et al.
    Anthocyanin accumulation and molecular analysis of anthocyanin biosynthesis-associated genes in eggplant (Solanum melongena L.).
    J. Agric. Food Chem., 2014. 62(13): p. 2906-12
    [PMID:24654563]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]