PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00037.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 297aa    MW: 33682.6 Da    PI: 8.0614
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00037.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.3e-314494151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++gklye++s
  Sme2.5_00037.1_g00007.1 44 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLIFSNRGKLYEFCS 94
                             79***********************************************96 PP
2K-box38.93.6e-14951323471
                    K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                              +++hllG++L++L++ +L++Le qL++slk+iRs++++
  Sme2.5_00037.1_g00007.1  95 SNKHLLGDELGPLTIDDLEHLEAQLDTSLKHIRSTRKK 132
                              679******************************98875 PP
3K-box14.31.7e-0619422569100
                    K-box  69 KnellleqieelqkkekelqeenkaLrkklee 100
                              +++++l+q+++lq kek  +e+nk L++k+ee
  Sme2.5_00037.1_g00007.1 194 RTQMMLDQLSDLQTKEKLWNEANKVLERKMEE 225
                              69***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3753696IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-293697IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-413695IPR002100Transcription factor, MADS-box
CDDcd002651.34E-393795No hitNo description
PROSITE patternPS0035003892IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-323858IPR002100Transcription factor, MADS-box
PfamPF003199.3E-264592IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-325873IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-327394IPR002100Transcription factor, MADS-box
PfamPF014861.5E-994131IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAKLHLTEDM TLDRKEWRSG EKRGSNSYPR EEIIRMGRGR VELKRIENKI NRQVTFAKRR  60
NGLLKKAYEL SVLCDAEVAL LIFSNRGKLY EFCSSNKHLL GDELGPLTID DLEHLEAQLD  120
TSLKHIRSTR KKDLPLGLFH GSYALIVGSP TAATGPCNQT EWVLVLKFSP TAIILCCLEC  180
VQPSDPRRIP VRGRTQMMLD QLSDLQTKEK LWNEANKVLE RKMEEIYAEN NLHQPWGGGE  240
QSLTYGQQQH PQSQGFFQPL DCNSSLQIGY DPITTSSQIT AVTNAQNVNG MIPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-183696161MEF2 CHIMERA
6byy_B5e-183696161MEF2 CHIMERA
6byy_C5e-183696161MEF2 CHIMERA
6byy_D5e-183696161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3020151e-147AJ302015.1 Lycopersicon esculentum mRNA for MADS-box protein (TM29 gene).
GenBankAY0987381e-147AY098738.2 Lycopersicon esculentum TAGL2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561270.11e-107PREDICTED: developmental protein SEPALLATA 1 isoform X2
SwissprotQ8LLR23e-68MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1U8FRB41e-106A0A1U8FRB4_CAPAN; Developmental protein SEPALLATA 2
TrEMBLA0A2G2XHK91e-106A0A2G2XHK9_CAPBA; Developmental protein SEPALLATA 2
TrEMBLA0A2G3ABL51e-106A0A2G3ABL5_CAPAN; developmental protein SEPALLATA 1 isoform X2
TrEMBLA0A2G3D9461e-106A0A2G3D946_CAPCH; Developmental protein SEPALLATA 2
STRINGPGSC0003DMT4000034831e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-47MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]