PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00037.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 256aa    MW: 29487.4 Da    PI: 9.0698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00037.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.88.1e-211966148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd+ll ++vk++G g+W++++r+ g++Rt+k+c++rw +yl
  Sme2.5_00037.1_g00008.1 19 KGPWTPEEDKLLSEYVKLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 66
                             79********************************************97 PP
2Myb_DNA-binding51.32.6e-1672116147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Sme2.5_00037.1_g00008.1  72 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 116
                              6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4091466IPR017930Myb domain
SuperFamilySSF466893.56E-3216113IPR009057Homeodomain-like
SMARTSM007177.1E-181868IPR001005SANT/Myb domain
PfamPF002494.1E-191966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-242073IPR009057Homeodomain-like
CDDcd001674.38E-132166No hitNo description
PROSITE profilePS5129424.89267121IPR017930Myb domain
SMARTSM007172.3E-1471119IPR001005SANT/Myb domain
PfamPF002493.6E-1472116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2474120IPR009057Homeodomain-like
CDDcd001679.59E-1076117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MARGMMGWGA NSYEQGWRKG PWTPEEDKLL SEYVKLHGEG RWSSVSRCAG LNRTGKSCRL  60
RWVNYLRPGL KRGHITPQEE GIIIELHALW GNKWSTIARY LPGRTDNEIK NYWRTHFKKK  120
EKTPAKQDKK KLLRQLRNQS EQNSMTDKNI MSTQMEAEEE IKMKMKSDNN DMFTSSNCYH  180
QDPVVELPSV RTSSDISYAW PETFPMDGLW GGLWNLDDYP LQVAASDKCK IAVPATANCS  240
YATDYAVNLY NGGFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25191237110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754417e-59HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562250.11e-132PREDICTED: myb-related protein 340
TrEMBLA0A2G3D9071e-131A0A2G3D907_CAPCH; Transcription factor MYB59
STRINGPGSC0003DMT4000034791e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-71myb domain protein 121