PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00038.1_g00016.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 367aa    MW: 40385.6 Da    PI: 10.2757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00038.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.8e-31295352359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  Sme2.5_00038.1_g00016.1 295 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLIVTYEGEHNHS 352
                              99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.5E-18243291IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-33281352IPR003657WRKY domain
PROSITE profilePS5081130.699288354IPR003657WRKY domain
SuperFamilySSF1182906.02E-27290352IPR003657WRKY domain
SMARTSM007746.6E-38293353IPR003657WRKY domain
PfamPF031063.7E-27295351IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAVDLMTTGY RNDSFSSKME ETAVQEAAAA GLQSVEKLIR LLSQSHQHQH QQQQHQKPNF  60
QDSSSSSLTN SSVSADYQAV ADAAVNKFKK FISLLDKNRT GHARFRRGPI TSRPPPPPPP  120
PPSSLSKPQQ NKLQLQQPIK NQNPQIEEIE KSQTTKIYCP TPIQRLPPLP HNHLQIVKNG  180
SIERKEASTT INFASPSPAT SFMSSLTGET ESLQQSLSSG FQITNLSQVS SAGRPPLSTS  240
SFKRKCSSMD DAALKCSSAG GSSGRCHCPK KRKSRVKRVV RVPAISMKMA DIPPDDYSWR  300
KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPAM LIVTYEGEHN HSHSITETPA  360
AHVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21281351271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569140.0EU056914.1 Solanum tuberosum WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074398.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-99WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA7UGC90.0A7UGC9_SOLTU; WRKY transcription factor 2
STRINGSolyc04g078550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.13e-85WRKY DNA-binding protein 7