PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00038.1_g00024.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 180aa    MW: 20356.8 Da    PI: 8.6231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00038.1_g00024.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-171766255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  Sme2.5_00038.1_g00024.1 17 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 66
                             69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-351780IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-201775IPR016177DNA-binding domain
PROSITE profilePS5103221.9971774IPR001471AP2/ERF domain
PRINTSPR003671.4E-111829IPR001471AP2/ERF domain
PfamPF008472.0E-101866IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-291875IPR001471AP2/ERF domain
CDDcd000184.59E-281875No hitNo description
PRINTSPR003671.4E-115676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMEGEKRKQR QHQQDKPYRG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP VAAARAYDTA  60
VFYLRGPSAR LNFPDCIVDD HEIHDLSAAS IRKKATEVGA RVDAPQAAIH NSTANPAESN  120
CDSNSKPQRI MMKPDFALQA AIHNSTANPA ESNCDSNSKP QRIMMKPDLN EYPESCEEDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-151474263ATERF1
3gcc_A9e-151474263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258581e-134JN125858.1 Solanum tuberosum dehydration-responsive element-binding protein DREB2 (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335346.16e-91DEAR1-like TCP binding protein
SwissprotQ9FH942e-48ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A3Q7H1Z82e-89A0A3Q7H1Z8_SOLLC; Uncharacterized protein
STRINGSolyc04g078640.1.11e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.19e-51DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]