PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00039.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29803.6 Da    PI: 8.8483
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00039.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18113167256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L  rqV vWFqNrRa+ k
  Sme2.5_00039.1_g00005.1 113 RKKLRLTKEQYDVLEDSFKQHTTLNSTQKRDLARRLSLRPRQVEVWFQNRRARTK 167
                              788899***********************************************98 PP
2HD-ZIP_I/II112.82.1e-36113201190
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq  +LE+sF+++++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E+++e L++ y++l+een+rL ke ++
  Sme2.5_00039.1_g00005.1 113 RKKLRLTKEQYDVLEDSFKQHTTLNSTQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEVNCEILRKYYEELEEENRRLIKEIQD 198
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lree 90 
                              L+ +
  Sme2.5_00039.1_g00005.1 199 LK-S 201
                              *9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17104167IPR009057Homeodomain-like
SuperFamilySSF466895.13E-18107170IPR009057Homeodomain-like
PROSITE profilePS5007117.41109169IPR001356Homeobox domain
SMARTSM003891.1E-13111173IPR001356Homeobox domain
PfamPF000461.3E-15113167IPR001356Homeobox domain
CDDcd000861.24E-12113170No hitNo description
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
SMARTSM003401.1E-14169212IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-7169202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MICNTRLSLS LGSSSPPHQN NKKRKLSTDD DNQELALCLS TSSEFTNNCD NRINPQLLGV  60
NSSISSFSNT SSVKRERDAR SIEEEVEILE TKKVVLISPK GLIDDDDDDY RTRKKLRLTK  120
EQYDVLEDSF KQHTTLNSTQ KRDLARRLSL RPRQVEVWFQ NRRARTKLKQ TEVNCEILRK  180
YYEELEEENR RLIKEIQDLK SLKMSAPFRV QLSAATLSIC PSCERNYGGA AATDNSKKIS  240
FSIGDQKPHV YHGIHHQLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RTRKKLR
2111117TRKKLRL
3161169RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238055.11e-125homeobox-leucine zipper protein HAT22-like
TrEMBLA0A3Q7G9I81e-124A0A3Q7G9I8_SOLLC; Uncharacterized protein
STRINGSolyc04g077220.2.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-40HD-ZIP family protein