PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00044.1_g00032.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 720aa    MW: 80407 Da    PI: 6.9635
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00044.1_g00032.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-13136222196
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk+ ++++++k++   +p++f++ehg  ++ +  + le ++g +W+vkl   ++sg+++l +GW++F +   +  g f++F+ +g
  Sme2.5_00044.1_g00032.1 136 FFKIILSPHASKLH---IPNEFVKEHG--TTLGDFVFLEVPNGVVWKVKL--LNCSGMVWLNEGWNKFKEYYSIACGYFLLFRCKG 214
                              78888777777766...*********8..44777899*************..*******************************999 PP

                              SSEE..EEEE CS
                       B3  87 rsefelvvkv 96 
                              +s+f   v +
  Sme2.5_00044.1_g00032.1 215 NSQF--SVFI 222
                              9999..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-20131226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-22133233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.603133226IPR003340B3 DNA binding domain
CDDcd100171.01E-15134224No hitNo description
PfamPF023622.2E-10136222IPR003340B3 DNA binding domain
SMARTSM010191.3E-9136226IPR003340B3 DNA binding domain
SuperFamilySSF562192.36E-13543671IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.104.0E-12544671IPR005135Endonuclease/exonuclease/phosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MVGIVVFVVS IEWFFYFNQL EYQLAEELIV EYSGSRSYIS ANEVNARFLL RVGIAVCGII  60
IVSKRKCKKL TLLKYEEQLT ELVDRQEEQL SEVVDRRDKH LTVMTNRRKK RLVGMADRQG  120
QKEPKPADTP PMTPHFFKII LSPHASKLHI PNEFVKEHGT TLGDFVFLEV PNGVVWKVKL  180
LNCSGMVWLN EGWNKFKEYY SIACGYFLLF RCKGNSQFSV FIFDLSASEI EYPPGPSEDT  240
TQNQCVVDEP PEENGINVPP PSEQPEENRI NVPPPSESPE ENGINVPPLN EPPEENGINI  300
APPSDQPEDN GINVPPPSEP PEENGMNVPP PSEPPEENGM NVPPPSEPAE ENGINVGPHS  360
DQPEENGINV PTPSGPPEEN GINIPPPSEP PEENTIILPP PGIYTMEELS LTSMPSRPWV  420
VLPSSVLSSP SSSSGRRLGR RHLRRSGLHH RRLCRRRRRV CVWCLHSLLL LLHHRRLYSL  480
RVRRPVDLST FWAEIRVCLV LVCKEYHLYS SVAIGENGGL GSCRRLGSEG RGRGGKKVTG  540
LVNLRIASWN IGSLTGKSIE LVKCLKRRSI NIACVQETRW VGTKARDVDG FKLWYSGGSR  600
GRNGVGILVD ENLREYVVEV RRVNDRMMFI KLVVGRXVVN VVSAYAPQVG LDGEVKRLFW  660
EDLDEVVRGI PAAEKSSLGV TLMGISGLLL VGLTTFMEAL VLGRGMTVGR LSWSLPKLLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444457RSGLHHRRLCRRRR
2450457RRLCRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-124HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-22B3 family protein