PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00062.1_g00018.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 466aa    MW: 51986.9 Da    PI: 9.8319
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00062.1_g00018.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.9e-104798147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             +++WT eE+  l+ ++ ++G+g W+tI +          R+  ++k++w++ 
  Sme2.5_00062.1_g00018.1 47 KQKWTSEEEAALKAGILKHGPGKWRTILKDPEfsgvlCLRSNVDLKDKWRNM 98
                             79***********************************66***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1544113IPR009057Homeodomain-like
SMARTSM007178.7E-646101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-134698IPR009057Homeodomain-like
PfamPF002493.9E-74798IPR001005SANT/Myb domain
PROSITE profilePS500907.3994799IPR017877Myb-like domain
CDDcd116603.97E-174899No hitNo description
PROSITE profilePS5150422.878156230IPR005818Linker histone H1/H5, domain H15
SMARTSM005263.5E-12160225IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.07E-15160235IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-13161234IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.7E-6167223IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGFWLAWVAD FLSFFWGWLL EMREGDAGSH GNGRWWLFQV VLMGAPKQKW TSEEEAALKA  60
GILKHGPGKW RTILKDPEFS GVLCLRSNVD LKDKWRNMTV MANGWGSREQ SRLAVKKMKQ  120
TPKQDESLVT DMTAAESDEE AAEARPITTS SGSPQIHGSK RSMIRLDNLI MEAISSLKEP  180
GGSNKTTIAE YIEDQCWAPP NFKRLLSGKL KYLTATGKLI KMKRKYRIVP MSTPSDSRTN  240
LSITLLDSRQ RIFSKINRDD MNMLSTSRID LELAKMRNMT PQEAAAAAAQ AVAEAEEAIA  300
EAEEAGREAE AAEADAEAAQ AFSVAAKKTL HGRSAPRMVG HPFMPIILSV SIIFLVSLPI  360
LCFTVLRICS SLCVEPLLIQ SKIVFVGGEG GVRMGVSPHS EFGVRSYALF RRTYLGWDSV  420
PSQTVKSFTT REANRDNGEP SRTMKSFTTR EASRVKFWIK IKEAFY
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166261.11e-168PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_015166262.11e-168PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_015166263.11e-168PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_015166264.11e-168PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK49e-92TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E11e-166M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595431e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-89telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]