PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00066.1_g00020.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 439aa MW: 49228.9 Da PI: 6.6834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00066.1_g00020.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	258	305	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sme2.5_00066.1_g00020.1 258 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 305 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.54E-10	252	309	No hit	No description
SuperFamily	SSF47459	2.22E-17	252	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-17	254	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	254	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	258	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-11	260	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MEKGNLFMSD DNTPMGSYEQ LQNCFFNPNL DNNTNNSDPF ESALSSMVSS PVTIPNNSGG 60 GDNFVLRELI GRLGSICNSR EMSPNSYNMN NNNSTNNSCY STPLNSPPKL NLSMMGNLPP 120 TQFTTDPGFA ERAARFSCFA TNMESGQLSR VSSNHSIKIQ EFKDVNLVDS RENSSVSEQI 180 IDTNSRKRKS ISKGKSTKIA NEKNESNAKR SKSEENENKA AKEEQKAAVE ENKDNQKPPE 240 PPKDYIHVRA RRGQATDAHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY 300 VQSLQRQVEF LSMKLATVNP RMDFNMEALL SKDMFQSRGS LAHNMYPSET STQTFPYGFQ 360 SQPNQNYHKG AEFPFPNNPN LIRNSSMQLP PLDGFVEPTP QVPTFFEDDL NRVVQMGFGQ 420 NQNQSFPGNI PNSQMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MEKGNLFMSD DNTPMGSYEQ LQNCFFNPNL DNNTNNSDPF ESALSSMVSS PVTIPNNSGG  60
GDNFVLRELI GRLGSICNSR EMSPNSYNMN NNNSTNNSCY STPLNSPPKL NLSMMGNLPP  120
TQFTTDPGFA ERAARFSCFA TNMESGQLSR VSSNHSIKIQ EFKDVNLVDS RENSSVSEQI  180
IDTNSRKRKS ISKGKSTKIA NEKNESNAKR SKSEENENKA AKEEQKAAVE ENKDNQKPPE  240
PPKDYIHVRA RRGQATDAHS LAERVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY  300
VQSLQRQVEF LSMKLATVNP RMDFNMEALL SKDMFQSRGS LAHNMYPSET STQTFPYGFQ  360
SQPNQNYHKG AEFPFPNNPN LIRNSSMQLP PLDGFVEPTP QVPTFFEDDL NRVVQMGFGQ  420
NQNQSFPGNI PNSQMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	SRKRKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-86	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006358792.1	0.0	PREDICTED: transcription factor bHLH62
Swissprot	Q9SRT2	5e-94	BH062_ARATH; Transcription factor bHLH62
TrEMBL	M1BDN1	0.0	M1BDN1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400042791	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]