PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00068.1_g00032.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 324aa    MW: 36868.6 Da    PI: 6.5446
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00068.1_g00032.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.64.1e-38631621100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk++rrkC++dCvlapyfp++++++f n+hklFG+sn++k++++l++  +++am+++++++++ra+dPv G++++i++lq++
  Sme2.5_00068.1_g00032.1  63 ACAACKYQRRKCEPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKTIRHLDQPFKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRH 148
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++  k+el+ + ++
  Sme2.5_00068.1_g00032.1 149 IDYCKTELDIVLHQ 162
                              *******9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.60362163IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-3663158IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQNQITSFTN SNNNNNNIPI HQTPHTFITD HNNLNQNKYT KRVHNNNNDN KKGVLRVSGA  60
GQACAACKYQ RRKCEPDCVL APYFPHDRQR QFLNAHKLFG VSNITKTIRH LDQPFKDEAM  120
RTIIFQSDVR ANDPVGGCYR IIRDLQRHID YCKTELDIVL HQLAYCRAQA VAAAAAAASE  180
QQQILTDHHA TEESLNDNNC DGVVNQADAL VSNNNNASSY DQYHPHDSYY NHPRGDQQVE  240
DGQQYDGQLD LADINFPWSL HEQQSTSTSV PNSMMKQLSV NDHCDNIKEP ILEGLSSFGS  300
FEHDQTFDQH RSVLHFIRSL VLII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-26591577105LOB family transfactor Ramosa2.1
5ly0_B3e-26591577105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079305.11e-180LOB domain-containing protein 22
TrEMBLM1A1B20.0M1A1B2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000124980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-51LOB domain-containing protein 22