PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00081.1_g00022.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 460aa MW: 51171.4 Da PI: 6.4416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00081.1_g00022.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	301	348	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sme2.5_00081.1_g00022.1 301 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 348 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.66E-10	295	352	No hit	No description
SuperFamily	SSF47459	9.42E-17	295	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-16	297	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.396	297	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	301	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-10	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MDNDYFSNGG IQPPFHFDPK TPLNSLHSPP QPNSDYFLNT HFDSELISIV SSPNTVDSSS 60 SLCELIGKLG SICSSPLAPF TNSSSNNMTD STRTSCYTTP MNSPPKLMNQ MGKDRLPNLG 120 DSVLLNSPPI SGAKFSRFGS RSFNGRTSQF ELNNEESRYG SGAGVVGRGN LTRILSSPSL 180 VQNMMCERLN LSKISGHNEE CSVSEQDPSG EMGSKTRNVL NLRKRKAVKS KNFVPIVDET 240 EDGRGKRRAK STEGNGSVKT EEQKGSENEE AEKEEMENQK IAEPPKDYIH VRARRGQATD 300 SHSLAERVRR EKISQRMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLAS 360 VNPRMDVHID NLLHKEICQP NVSLHQHVYP ADGYGENLTQ LPTVCEDDLQ SIVQMGFIQN 420 PNQDLMLQSL GFIQNSNQDL MLQSQTFPVP NSDSHMKIEM

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MDNDYFSNGG IQPPFHFDPK TPLNSLHSPP QPNSDYFLNT HFDSELISIV SSPNTVDSSS  60
SLCELIGKLG SICSSPLAPF TNSSSNNMTD STRTSCYTTP MNSPPKLMNQ MGKDRLPNLG  120
DSVLLNSPPI SGAKFSRFGS RSFNGRTSQF ELNNEESRYG SGAGVVGRGN LTRILSSPSL  180
VQNMMCERLN LSKISGHNEE CSVSEQDPSG EMGSKTRNVL NLRKRKAVKS KNFVPIVDET  240
EDGRGKRRAK STEGNGSVKT EEQKGSENEE AEKEEMENQK IAEPPKDYIH VRARRGQATD  300
SHSLAERVRR EKISQRMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLAS  360
VNPRMDVHID NLLHKEICQP NVSLHQHVYP ADGYGENLTQ LPTVCEDDLQ SIVQMGFIQN  420
PNQDLMLQSL GFIQNSNQDL MLQSQTFPVP NSDSHMKIEM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352666.1	0.0	PREDICTED: transcription factor bHLH62
TrEMBL	M1BSK9	0.0	M1BSK9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400051980	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-66	bHLH family protein