PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00102.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 472aa    MW: 51794.1 Da    PI: 6.935
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00102.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-061144336
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                              r C+ ++++ + l+C+ +   lC  C +  H+ 
  Sme2.5_00102.1_g00009.1 11 SRPCDFCNQQIAVLYCRADTAKLCLFCDQLVHSA 44
                             678**************************99954 PP
2zf-B_box20.51e-065496339
                 zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              ++C++++++++++ C +++  lC+dC    H +      H++
  Sme2.5_00102.1_g00009.1 54 SQICDNCGSEPVSIRCATDNLVLCQDCDWDAHGScavcgaHDR 96
                             579************************9998944777777765 PP
3CCT63.85.2e-22424468145
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                              R +a++RYkeK+ktR+++K+irYesRKa+A++R+R+KGrFvk++e
  Sme2.5_00102.1_g00009.1 424 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRIKGRFVKASE 468
                              7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.456956IPR000315B-box-type zinc finger
SMARTSM003362.0E-10956IPR000315B-box-type zinc finger
CDDcd000215.08E-71244No hitNo description
PROSITE profilePS501198.8735299IPR000315B-box-type zinc finger
CDDcd000214.98E-75685No hitNo description
SMARTSM003364.55799IPR000315B-box-type zinc finger
PfamPF062032.8E-16424466IPR010402CCT domain
PROSITE profilePS5101714.852424466IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MSPESRSPGE SRPCDFCNQQ IAVLYCRADT AKLCLFCDQL VHSANALSKK HLRSQICDNC  60
GSEPVSIRCA TDNLVLCQDC DWDAHGSCAV CGAHDRNTVE GFSGCPSASE LASAWGFDIE  120
AKKPPQQPTF SEYPSWMSKD APPSSILLQD LMVPSANNSG IFLPVTASAR DVGRKQTPTC  180
GKQKQVIFKQ LIELLKRDLA DGFGAGPKDL LSKTPNGSTD WQGNVNVTDE SDAVMDGVTQ  240
KLEQQQSQNV LFSSLIMPHN PKDSDQMVEQ NILWRGNSFD QNTQIWDFNL GQLRSHEQCS  300
SLEADYSESD MVHMMKSYGE LIKGTSLATS KGLGLSGIDC SVAHDDMIAF SNNSNNRAAS  360
QGPATSESNN LPRIKTSSGS GYLKPKSCGV YTDLNFMDQS IVVGGENIGA ETVKADMELL  420
AKNRGNAMQR YKEKKKTRRY DKHIRYESRK ARADTRKRIK GRFVKASEAP DG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-138HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555175.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1U8FHD30.0A0A1U8FHD3_CAPAN; zinc finger protein CONSTANS-LIKE 14-like
STRINGPGSC0003DMT4000653770.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.14e-99B-box type zinc finger protein with CCT domain