PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00113.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 325aa MW: 36252.5 Da PI: 4.5119

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00113.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25	2.4e-08	7	31	20	44
HHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstg 44 + KK +ELS+LCd+++++ii+ ++ Sme2.5_00113.1_g00009.1 7 LVKKISELSILCDIKACMIIYDGNN 31 78******************96555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.58E-9	7	69	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-6	7	32	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MTTLVKLVKK ISELSILCDI KACMIIYDGN NHQIWPHDSN EVEELINLYK NQPLEGRSKR 60 NKSLSNYFKN DQKIKADIKV EKYPTWDSRF DYLSSEELQN LAGVLEKRMQ NAKGRVEFLK 120 STKVEDSNIG SSLSHHEIWD NDNLKQSTMW PVNSFTDYEN FFQSNIPICG VDSVGVGTDN 180 GLLSVDDYQF GNADYFMMIE RENWSADNEN GSSLTMQPMT NNEIGSSLTM QSMENNGIGT 240 SSIMLTMANN GIGSSATMQP MANNGNNGIG SSATMQPMAN NGIGSSATMQ PMANNGIGSS 300 VTMHIMDQWP FIYNDSTHDM PYGFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350347.1	1e-139	PREDICTED: serum factor response D-like
TrEMBL	M1CN25	1e-128	M1CN25_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400071001	1e-129	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6342	12	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-13	M-type_MADS family protein