PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00126.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARR-B
Protein Properties Length: 540aa    MW: 60200.2 Da    PI: 6.4088
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00126.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.41.8e-24153206155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+r++Wt +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Sme2.5_00126.1_g00006.1 153 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMGVPWLTRENVASHLQKYRL 206
                              68*******************.9*******************************8 PP
2Response_reg55.72.8e-1938726109
                              EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                              v+++  ++eal ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Sme2.5_00126.1_g00006.1   3 VTTCGLAREALYLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 87 
                              66777789999999888889**********************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011032.729193IPR001789Signal transduction response regulator, receiver domain
SMARTSM004485.9E-6189IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.2E-1162523IPR017053Response regulator B-type, plant
SuperFamilySSF521725.98E-243101IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.2E-313108No hitNo description
CDDcd001561.69E-21393No hitNo description
PfamPF000725.4E-16488IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.608.4E-28151210IPR009057Homeodomain-like
SuperFamilySSF466891.79E-17151210IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-22153206IPR006447Myb domain, plants
PfamPF002493.4E-8155205IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGVTTCGLAR EALYLLRERK DGFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE  60
TSRVMKGVQH GACDYLLKPI RMKELRNIWQ HVLRKKMQEA RDTGNHEIDQ YDEVWMLNGA  120
EILSGKKRKD FEYKHDEREM SDSRCIESSS MKKARVVWTV DLHQKFVKAV NQIGFDKVGP  180
KKILDLMGVP WLTRENVASH LQKYRLYLTR LPKEDEVKPS FRGMKHQDVS PKETCSGLIL  240
QNPVDVCTDV TNDKYGCVSG DKAIAQNQKS NIYESKVKGV VSVPAAEPGS VVEDNFDSQT  300
ARSKCSTLIG LKDSFGLVST DVKSAKVPTP YCSTGEAPQP QYKQQDFKPH FQSANGSSHQ  360
PLPVLSHQIA VERTQASCFL NHIPPCETSD RHQDTKNAPS FFKSKNGGVA KFSPVESTVN  420
LFQPVSHQQT NFHNLEQMPS TTWSAASHNG AIGPQSSPGN LTLRSGSIVA SVGEDMCGAS  480
IQGERFLANN GLPNIEQFDY DDPQLISGVP TCLYDTLRFD YEYPIDSLEG IVMDQGLFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17149211163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341767.10.0PREDICTED: two-component response regulator ARR11 isoform X1
RefseqXP_006341768.10.0PREDICTED: two-component response regulator ARR11 isoform X2
TrEMBLA0A0V0IG200.0A0A0V0IG20_SOLCH; Putative two-component response regulator ARR11-like
STRINGPGSC0003DMT4000312600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.17e-96response regulator 11