PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00128.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 754aa MW: 83615.5 Da PI: 5.9334

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00128.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.8e-20	76	132	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r++ +++t++q++eLe++F+++++p+ ++r++L++ lgL+ q+k+WFqN+R+++k+ Sme2.5_00128.1_g00001.1 76 RKRYHRHTQHQIQELEAFFKECPHPDDKQRKDLSRALGLEPLQIKFWFQNKRTQMKN 132 688899************************************************995 PP
2	START	189	2.4e-59	269	490	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 l ++ ++e+v++a ++ep+W+ s + +n +e+ ++f+++ + +s+ea r+++vv+m + +lve+l+d+k W ++ Sme2.5_00128.1_g00001.1 269 LVLASMEEFVQMAHLQEPLWFPSMdngtSLLNIEEYFRSFPRGIGprpigFSTEATRETTVVIMSHGNLVEILMDVK-HWASMFSg 353 56789*****************9999999*******999****************************.**** PP ...EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS START 78 ...kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152 +a+t++v+s+g ga+q++ ae+q+ sp vp R+ +f+Ry++q +g+w+ivdvS+d+ + + R++++pSg+ Sme2.5_00128.1_g00001.1 354 ivsRASTIDVLSTGsvagnfnGAIQVILAETQLASPQVPtRECYFARYCKQRVDGTWAIVDVSLDHLRTGG---PPTRSRKRPSGC 436 **************************************************************99875...579***** PP EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +i++++ng+skvtw+ehv+++++ +h ++++lv+sgla+gak+w+atl+rqc++ Sme2.5_00128.1_g00001.1 437 IIQEMPNGYSKVTWIEHVEVDDSGIHHIYKPLVSSGLAFGAKRWLATLDRQCQR 490 **************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.1E-19	69	138	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-21	70	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	73	133	IPR001356	Homeobox domain
SMART	SM00389	1.5E-19	74	137	IPR001356	Homeobox domain
Pfam	PF00046	9.5E-18	76	131	IPR001356	Homeobox domain
CDD	cd00086	1.96E-17	83	134	No hit	No description
PROSITE pattern	PS00027	0	108	131	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.04	259	493	IPR002913	START domain
SuperFamily	SSF55961	2.75E-31	262	490	No hit	No description
CDD	cd08875	3.50E-112	263	489	No hit	No description
SMART	SM00234	1.4E-53	268	490	IPR002913	START domain
Pfam	PF01852	3.7E-49	270	490	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.6E-8	325	488	IPR023393	START-like domain
SuperFamily	SSF55961	1.08E-22	510	744	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MPARSSRPAR KMPSLVENDG TDTRFPLDQA SNMVDSQPNN SMDNVSNTSE TEMAQEFEDA 60 NQQDEQEENV NNRRKRKRYH RHTQHQIQEL EAFFKECPHP DDKQRKDLSR ALGLEPLQIK 120 FWFQNKRTQM KNHHERHENT HLRVENEKLK SEMLRYKEAL GNALCPSCGG QRVHMNGEMS 180 YDERQLRLEN ARLKEEIERI SSTAGKYAGK SLFPNNLHNV VDFIGIDIPQ YSTPCGVDGE 240 GYNNGDIGFE DVMMHGPISE VEKPFIIELV LASMEEFVQM AHLQEPLWFP SMDNGTSLLN 300 IEEYFRSFPR GIGPRPIGFS TEATRETTVV IMSHGNLVEI LMDVKHWASM FSGIVSRAST 360 IDVLSTGSVA GNFNGAIQVI LAETQLASPQ VPTRECYFAR YCKQRVDGTW AIVDVSLDHL 420 RTGGPPTRSR KRPSGCIIQE MPNGYSKVTW IEHVEVDDSG IHHIYKPLVS SGLAFGAKRW 480 LATLDRQCQR LVSAVATPIP TNDFSNMVLS TQESRSSMLK LSERMVNSFT SGVSASAGNN 540 WTTLTTGNGA DEMVRVMTRK SVSDPGRPPG IVLSAATSFW LPISPKIVFD FLRDENTRNE 600 WDILSNGGMV QEMAHIVNGI ETGNCASLLR VNSDNASQSN MLILQESITD PTGSYVIYAP 660 VDVNAMNIVL NGGDPDFVPL LPSGFAILPD GPPGVIGARG TYNNSPGGSL LTVAFQILVD 720 YVPTAKISLG SIATVNNLIA CTVDKIKGAL LPKP

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MPARSSRPAR KMPSLVENDG TDTRFPLDQA SNMVDSQPNN SMDNVSNTSE TEMAQEFEDA  60
NQQDEQEENV NNRRKRKRYH RHTQHQIQEL EAFFKECPHP DDKQRKDLSR ALGLEPLQIK  120
FWFQNKRTQM KNHHERHENT HLRVENEKLK SEMLRYKEAL GNALCPSCGG QRVHMNGEMS  180
YDERQLRLEN ARLKEEIERI SSTAGKYAGK SLFPNNLHNV VDFIGIDIPQ YSTPCGVDGE  240
GYNNGDIGFE DVMMHGPISE VEKPFIIELV LASMEEFVQM AHLQEPLWFP SMDNGTSLLN  300
IEEYFRSFPR GIGPRPIGFS TEATRETTVV IMSHGNLVEI LMDVKHWASM FSGIVSRAST  360
IDVLSTGSVA GNFNGAIQVI LAETQLASPQ VPTRECYFAR YCKQRVDGTW AIVDVSLDHL  420
RTGGPPTRSR KRPSGCIIQE MPNGYSKVTW IEHVEVDDSG IHHIYKPLVS SGLAFGAKRW  480
LATLDRQCQR LVSAVATPIP TNDFSNMVLS TQESRSSMLK LSERMVNSFT SGVSASAGNN  540
WTTLTTGNGA DEMVRVMTRK SVSDPGRPPG IVLSAATSFW LPISPKIVFD FLRDENTRNE  600
WDILSNGGMV QEMAHIVNGI ETGNCASLLR VNSDNASQSN MLILQESITD PTGSYVIYAP  660
VDVNAMNIVL NGGDPDFVPL LPSGFAILPD GPPGVIGARG TYNNSPGGSL LTVAFQILVD  720
YVPTAKISLG SIATVNNLIA CTVDKIKGAL LPKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	77	RRKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352040.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	M1DTG6	0.0	M1DTG6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400094124	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA932	24	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]