PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00130.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 245aa MW: 28188.9 Da PI: 9.7659

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00130.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.7	8.3e-32	35	140	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f kv tpsdv+k++r+v+pk++ae++ +g+ +++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD++ Sme2.5_00130.1_g00009.1 35 FNKVVTPSDVGKLNRIVIPKQHAEKYfpldsSGNDKGGLLLNFEDSHGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTIS 120 89***************************55666889******************************************* PP EEE-.SS.SEE..EEEEE-S CS B3 82 Fkld.gr.sefelvvkvfrk 99 F++ g+ s+ +l++ ++r+ Sme2.5_00130.1_g00009.1 121 FQRGaGEfSRHRLFIDWHRR 140 766888888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.9E-41	23	141	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-31	32	139	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.69E-24	33	123	No hit	No description
SMART	SM01019	4.5E-21	35	141	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.24	35	136	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-29	35	140	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDFFGSSKKG EEASSSNNTE LMMMNSSLIE REHMFNKVVT PSDVGKLNRI VIPKQHAEKY 60 FPLDSSGNDK GGLLLNFEDS HGKQWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDTIS 120 FQRGAGEFSR HRLFIDWHRR PTYNHCKYMY GIGDPSASPY YYRTSTSFNN DTTINNMMMR 180 SVPPKGVVLE PRVFNSVPVV QGKVEAKRLR LFGVNMDYTM DIIPSIPTTS SEESSKKGKF 240 FDLDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-60	28	141	1	114	B3 domain-containing transcription factor NGA1
5os9_B	1e-60	28	141	1	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352299.2	1e-106	PREDICTED: B3 domain-containing transcription factor NGA3-like
Swissprot	Q6EU30	5e-64	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
Swissprot	Q8LMR9	4e-65	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	M1A593	1e-105	M1A593_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400015010	1e-106	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2817	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-64	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]