PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00135.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 30093.9 Da    PI: 9.3758
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00135.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.8e-313483150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             krien++nrqvtf+kRrng+lKKA+ELSvLCdaev++i+fss+g+lyey+
  Sme2.5_00135.1_g00012.1 34 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYA 83
                             79***********************************************8 PP
2K-box107.51.5e-351021984100
                    K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                              +++ s++ea+a+++qqe++kL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie +qk+e elq+
  Sme2.5_00135.1_g00012.1 102 TNTGSVSEANAQYYQQEASKLRRQIRDIQTYNRQIIGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFAEIELMQKREIELQN 187
                              333449******************************************************************************** PP

                    K-box  90 enkaLrkklee 100
                              +n++Lr+k++e
  Sme2.5_00135.1_g00012.1 188 ANMYLRAKIAE 198
                              ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-402685IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.0392686IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-3327102IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002882IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-322848IPR002100Transcription factor, MADS-box
CDDcd002651.36E-4230101No hitNo description
PfamPF003196.4E-263582IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-324863IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-326384IPR002100Transcription factor, MADS-box
PfamPF014864.9E-26110196IPR002487Transcription factor, K-box
PROSITE profilePS5129714.786112202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVFPNNQGLL VDESSSQLRK SGGGGGGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL  60
SVLCDAEVSL IVFSSRGRLY EYANNSVRGT IDRYKKHHAD STNTGSVSEA NAQYYQQEAS  120
KLRRQIRDIQ TYNRQIIGEA LSSLSPRDLK NLEGKLEKAI GRVRSKKNEL LFAEIELMQK  180
REIELQNANM YLRAKIAEVE RAQEQMNLMP EAGGGGGGGT EQYHHQPNYE DARNNFLPVN  240
LLEPNPHYSR CDDGIQTLQL VYASLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-2127113190Myocyte-specific enhancer factor 2A
3kov_B7e-2127113190Myocyte-specific enhancer factor 2A
3kov_I7e-2127113190Myocyte-specific enhancer factor 2A
3kov_J7e-2127113190Myocyte-specific enhancer factor 2A
3p57_A7e-2127113190Myocyte-specific enhancer factor 2A
3p57_B7e-2127113190Myocyte-specific enhancer factor 2A
3p57_C7e-2127113190Myocyte-specific enhancer factor 2A
3p57_D7e-2127113190Myocyte-specific enhancer factor 2A
3p57_I7e-2127113190Myocyte-specific enhancer factor 2A
3p57_J7e-2127113190Myocyte-specific enhancer factor 2A
5f28_A8e-2127113291MEF2C
5f28_B8e-2127113291MEF2C
5f28_C8e-2127113291MEF2C
5f28_D8e-2127113291MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0987350.0AY098735.2 Lycopersicon esculentum TAGL1 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348940.11e-168PREDICTED: floral homeotic protein AGAMOUS-like
RefseqXP_006348941.11e-168PREDICTED: floral homeotic protein AGAMOUS-like
SwissprotQ93XH41e-119MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A385MJ941e-164A0A385MJ94_CAPAN; AGAMOUS-like protein 2
STRINGPGSC0003DMT4000445521e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]