PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00155.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 287aa    MW: 33038.7 Da    PI: 7.129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00155.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-182572148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT eEd llv++++ +G g+W+  a++ g++Rt+k+c++rw++yl
  Sme2.5_00155.1_g00001.1 25 RGPWTIEEDRLLVHYITNHGEGRWNMLAKHAGLKRTGKSCRLRWLNYL 72
                             89********************************************97 PP
2Myb_DNA-binding53.26.8e-1778121146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T++E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
  Sme2.5_00155.1_g00001.1  78 RGNLTPQEQLLILELHSKLGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
                              7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7492076IPR017930Myb domain
SuperFamilySSF466892.34E-3122119IPR009057Homeodomain-like
SMARTSM007176.9E-142474IPR001005SANT/Myb domain
PfamPF002497.5E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-232679IPR009057Homeodomain-like
CDDcd001677.04E-112772No hitNo description
SMARTSM007174.7E-1577125IPR001005SANT/Myb domain
PROSITE profilePS5129420.87577127IPR017930Myb domain
PfamPF002498.6E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2380126IPR009057Homeodomain-like
CDDcd001673.78E-1182121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MERDMSFLSK SSSSSSSDDD MELRRGPWTI EEDRLLVHYI TNHGEGRWNM LAKHAGLKRT  60
GKSCRLRWLN YLKPDVKRGN LTPQEQLLIL ELHSKLGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQKQARNL KIDSNSAAFQ EMIRCLWIPR LLQKIQSSSV TPSKQSSQST SQGFNLDKNS  180
SNSSNSSSHS SNIYNSPEMI SECPRVTTRE VDDSDLSSFV KAHFPFDDNT YDVDNFGQLS  240
TGNFNDVMDY DQMSGDQNKL TGDVLLADSL WSNMDEFFYQ KTGYERL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-29221271105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-292212724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563145.11e-162PREDICTED: myb-related protein 340-like
SwissprotQ9C9G74e-77MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2G3A3771e-164A0A2G3A377_CAPAN; Transcription factor
STRINGPGSC0003DMT4000143831e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-76myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]