PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00159.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 213aa    MW: 24620 Da    PI: 10.0895
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00159.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.82.9e-322869102
                              HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
             HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                              ++ed+++++++sw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF++++F+kgkk+ll
  Sme2.5_00159.1_g00006.1   2 LVEDPATDNVVSWNSDGSAFVVWQPAEFASDLLPTLFKHSNFSSFVRQLNTYGFRKITTSR---------WEFSNNKFRKGKKNLL 78 
                              799*******************************************************999.........**************** PP

                              XXXXXXXX CS
             HSF_DNA-bind  95 ekikrkks 102
                              ++i+rkk 
  Sme2.5_00159.1_g00006.1  79 CEIRRKKA 86 
                              *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-39284IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-28284IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.0E-32284IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.4E-29284IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-93345IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403458IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-94658IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLVEDPATDN VVSWNSDGSA FVVWQPAEFA SDLLPTLFKH SNFSSFVRQL NTYGFRKITT  60
SRWEFSNNKF RKGKKNLLCE IRRKKAWTNK QQPNNNNNNG QSQNVINKKV NTEEDQRSSS  120
STSSSSEYIN LVDENKRLKM ENGILSSELS LMKNKCKELI GIVTIFAKNP EKEEEKKPML  180
FGVKLEVKEE MERKRKRVEL NEIASVFLSQ LCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-1928411104Putative transcription factor
5d5x_B3e-1928411104Putative transcription factor
5d5x_E3e-1928411104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-109HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-109HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072976.11e-120heat stress transcription factor B-3
SwissprotO222303e-57HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A3Q7GSI41e-117A0A3Q7GSI4_SOLLC; Uncharacterized protein
STRINGSolyc04g016000.2.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-52heat shock transcription factor B3