PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00165.1_g00017.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 104aa    MW: 11913.4 Da    PI: 9.3277
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00165.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP78.78.9e-254494251
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE.EE CS
                      SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf.he 51
                             Cq+++C++dls+ak+yh+rhkvCe h+k++vv+v+gl+qrfCqqCsrf h+
  Sme2.5_00165.1_g00017.1 44 CQADKCSVDLSDAKQYHKRHKVCEYHAKSQVVVVAGLRQRFCQQCSRFdHQ 94
                             ************************************************555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.3E-243792IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.95641104IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-234392IPR004333Transcription factor, SBP-box
PfamPF031101.3E-184492IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEKNDELLVI STCENAKKKI TNNNFYNKKG SSSSNSSSSV TRSCQADKCS VDLSDAKQYH  60
KRHKVCEYHA KSQVVVVAGL RQRFCQQCSR FDHQLFSVSF YMTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-193491158squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754463e-68HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774345.17e-39squamosa promoter-binding protein 1-like, partial
SwissprotQ387412e-21SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A2G3C0Z96e-36A0A2G3C0Z9_CAPCH; Squamosa promoter-binding protein 1
TrEMBLA0A3Q7HEQ92e-35A0A3Q7HEQ9_SOLLC; Uncharacterized protein
TrEMBLM1D6927e-36M1D692_SOLTU; Uncharacterized protein
STRINGSolyc07g053810.2.13e-36(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.13e-22squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]