PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_00169.1_g00018.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 706aa MW: 77634.2 Da PI: 9.4333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00169.1_g00018.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.6e-10	524	570	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs ++ Lr+ll + K +Ka+ L k+v+ +++L Sme2.5_00169.1_g00018.1 524 KNHKEAERRRRERINSHLHSLRTLLSCN-----SKTDKASLLAKVVQRVREL 570 79*********************997.....7**********998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR00946	4.7E-139	1	494	IPR014024	Auxin efflux carrier, plant type
Pfam	PF03547	5.4E-147	9	494	IPR004776	Membrane transport protein
PROSITE profile	PS50888	15.046	521	570	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-12	522	585	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-11	523	583	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-8	524	570	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.4E-10	527	576	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 706 aa Download sequence Send to blast
MISLSDLYHV LTAVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA 60 SNNPYAMNYR FIAADTLQKI IVLFVLAIWS RVSSRGSLEW SITLFSLSTL PNTLVMGIPL 120 LKGMYGDASG SLMVQIVVLQ CIIWYTLMLF LFEYRGARML IAEQFPDTGG NPTPRGSSFN 180 HTDFYSMVNG KNANMSPRHS NFGNYGHDEE SGVAGYGRGN GVYGPGNAGY PAPTNAGIFS 240 PATGPITKKK ANGGSEAGKD LHMFVWSSSA SPVSEGGIHV FRGGGDYGNE LSIGAHPKDY 300 DEFGREEFTF GNKQNLNGND REGPVVRSSS TTELRPKIAQ EETKPTSMPP ASVMTRLILI 360 MVWRKLIRNP NTYSSLIGLT WSLISFKWNV QMPAIIAKSI SILSDAGLGM AMFSLGLFMA 420 LSPRIIACGK TIAIFSMGVR FLTGPAVMAA ASIAVGLRGV LLHIAIVQAA LPQGIVPFVF 480 AKEYGVHPDI LSTGSSPFYP HGHHHVEFQE TVQSIDNTPE GRAKNHKEAE RRRRERINSH 540 LHSLRTLLSC NSKTDKASLL AKVVQRVREL KDETSKIMQS ETNLFPSETD EITVLSSNDW 600 LADGRLLIKA SLCCEDRFDL IPDLIETLKS LGLSPIRAEM VTLGGRIRNV IILAADHKES 660 NNNNTDDESS LLILRDALRS IVQRSSYGTG ERGKRRRVLR QGTTNY

Sequence ? help Back to Top

Protein Sequence Length: 706 aa Download sequence Send to blast

MISLSDLYHV LTAVVPLYVA MILAYGSVKW WKIFSPDQCS GINRFVALFA VPLLSFHFIA  60
SNNPYAMNYR FIAADTLQKI IVLFVLAIWS RVSSRGSLEW SITLFSLSTL PNTLVMGIPL  120
LKGMYGDASG SLMVQIVVLQ CIIWYTLMLF LFEYRGARML IAEQFPDTGG NPTPRGSSFN  180
HTDFYSMVNG KNANMSPRHS NFGNYGHDEE SGVAGYGRGN GVYGPGNAGY PAPTNAGIFS  240
PATGPITKKK ANGGSEAGKD LHMFVWSSSA SPVSEGGIHV FRGGGDYGNE LSIGAHPKDY  300
DEFGREEFTF GNKQNLNGND REGPVVRSSS TTELRPKIAQ EETKPTSMPP ASVMTRLILI  360
MVWRKLIRNP NTYSSLIGLT WSLISFKWNV QMPAIIAKSI SILSDAGLGM AMFSLGLFMA  420
LSPRIIACGK TIAIFSMGVR FLTGPAVMAA ASIAVGLRGV LLHIAIVQAA LPQGIVPFVF  480
AKEYGVHPDI LSTGSSPFYP HGHHHVEFQE TVQSIDNTPE GRAKNHKEAE RRRRERINSH  540
LHSLRTLLSC NSKTDKASLL AKVVQRVREL KDETSKIMQS ETNLFPSETD EITVLSSNDW  600
LADGRLLIKA SLCCEDRFDL IPDLIETLKS LGLSPIRAEM VTLGGRIRNV IILAADHKES  660
NNNNTDDESS LLILRDALRS IVQRSSYGTG ERGKRRRVLR QGTTNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	521	533	RAKNHKEAERRRR
2	529	534	ERRRRE
3	693	697	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a component of the auxin efflux carrier. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB508931	0.0	AB508931.1 Solanum lycopersicum SlPIN1 mRNA for auxin efflux carrier, complete cds.
GenBank	HQ127075	0.0	HQ127075.1 Solanum lycopersicum auxin efflux facilitator SlPIN9 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016543955.1	0.0	PREDICTED: probable auxin efflux carrier component 1b
Swissprot	Q67UL3	0.0	PIN1C_ORYSJ; Probable auxin efflux carrier component 1c
TrEMBL	A0A2G3BI51	0.0	A0A2G3BI51_CAPCH; Auxin efflux carrier component
STRING	Solyc10g078370.1.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41130.1	4e-53	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xu M,Zhu L,Shou H,Wu P A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice. Plant Cell Physiol., 2005. 46(10): p. 1674-81 [PMID:16085936] Wang JR, et al. Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones. Mol Plant, 2009. 2(4): p. 823-831 [PMID:19825657] Liu JM, et al. Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice. J. Exp. Bot., 2016. 67(6): p. 1883-95 [PMID:26826218]