PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00170.1_g00010.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 259aa    MW: 28434.6 Da    PI: 8.4876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00170.1_g00010.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-074668325
                             S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                             +++C  f+r G+C++G++C+++H
  Sme2.5_00170.1_g00010.1 46 ESICIPFRRCGICSFGEKCPYIH 68
                             578******************** PP
2zf-CCCH20.58.3e-071361491326
                              S--TTTTT-SS-SS CS
                  zf-CCCH  13 GtCkyGdrCkFaHg 26 
                              GtC yG++C+FaHg
  Sme2.5_00170.1_g00010.1 136 GTCVYGEKCTFAHG 149
                              9************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-54471IPR000571Zinc finger, CCCH-type
SMARTSM003560.594570IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-54668IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-44870IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.4884871IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5123154IPR000571Zinc finger, CCCH-type
SMARTSM003566.1125150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-8127155IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.671127151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSTPEKVSDT RDESNSNAEC ESLKKQNSRM AGERNMSNVP SVHVDESICI PFRRCGICSF  60
GEKCPYIHAR GKGENRESSA RTILDGESTD VPSRGIGFEE SSGSSAIKIE TRKPKKPAHF  120
LTKIKTKLFT LRGSDGTCVY GEKCTFAHGI AELRSLDSPN PPELQRSADI SAPARNVPAR  180
KDSSNPPESQ RSADISAPAR NVPTRKDSSN PPESQRSADI SAPDRNVPAS ETVTIAPADR  240
WFKLNDLKRN SRIYGDWIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-07C3H family protein