PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00170.1_g00011.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 185aa    MW: 20573 Da    PI: 9.0653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00170.1_g00011.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-071839425
                             ---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                             ++C  f+r G C++G++C++ H
  Sme2.5_00170.1_g00011.1 18 PICLQFQRWGNCRFGEKCRYVH 39
                             79******************** PP
2zf-CCCH45.41.3e-14101126227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              kt+lC ++ r G C+yG+rC+FaHg+
  Sme2.5_00170.1_g00011.1 101 KTRLCIRWERDGSCPYGSRCQFAHGK 126
                              9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0581441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.071442IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-51541IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-51839IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-51940IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-998130IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-799126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1499130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.41399127IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-12101126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAQEGNRFNV GRTLVHQPIC LQFQRWGNCR FGEKCRYVHT TGGSTYGPPQ GVGCDQRYLQ  60
GGKGRETAAI TIGTAGNEVK DKSYSDNVER KMSVDFRRNL KTRLCIRWER DGSCPYGSRC  120
QFAHGKGEMQ VVGYSNPPVS LSSAGIPAPA ENVASDETGS SAPSKLRFKW NDVQRISQIY  180
ADWIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068280.16e-83zinc finger CCCH domain-containing protein 12-like isoform X1
RefseqXP_025885921.14e-83zinc finger CCCH domain-containing protein 12-like isoform X2
TrEMBLA0A3Q7FUD93e-82A0A3Q7FUD9_SOLLC; Uncharacterized protein
STRINGSolyc03g116410.1.11e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-16C3H family protein