PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00170.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 193aa    MW: 21135.6 Da    PI: 9.3577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00170.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-081839425
                             ---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                             ++Cr f+r G C++G +C+++H
  Sme2.5_00170.1_g00012.1 18 PICRQFQRWGNCRFGKKCRYIH 39
                             79******************** PP
2zf-CCCH40.44.8e-1378103227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              kt+lC+ + r G C+yG+rC+FaHg+
  Sme2.5_00170.1_g00012.1  78 KTRLCKGWKRDGRCPYGSRCQFAHGE 103
                              9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0031441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7561442IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-61541IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-61839IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-61940IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-1074108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.36676104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-1777108IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-1078103IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-578103IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAQEGNRSNV GRTLVHPPIC RQFQRWGNCR FGKKCRYIHT TGGSTQRGRE TAAITVETAE  60
NEVKNVEPKR PVDFRYLKTR LCKGWKRDGR CPYGSRCQFA HGEGELRAVG CSNPAVSLSS  120
AGISAPAENN ETGSIAGISA PAENNETGSI AGISAPAEVA SNETGSSHPF KRRFKWNDVH  180
KIKGIYGDWI DEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068280.12e-55zinc finger CCCH domain-containing protein 12-like isoform X1
RefseqXP_025885921.11e-55zinc finger CCCH domain-containing protein 12-like isoform X2
TrEMBLA0A3Q7FUD98e-55A0A3Q7FUD9_SOLLC; Uncharacterized protein
STRINGSolyc03g116410.1.15e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-18C3H family protein