PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00175.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 208aa    MW: 22994.1 Da    PI: 6.2946
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00175.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-07433534
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                              C+ +e+  ++lfC  ++  lC++C ++ H
  Sme2.5_00175.1_g00007.1  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                             7**************************998 PP
2zf-B_box23.79.7e-085291237
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                             + + C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Sme2.5_00175.1_g00007.1 52 KIQHCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                             5689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
SMARTSM003366.0E-8147IPR000315B-box-type zinc finger
CDDcd000211.66E-6333No hitNo description
PfamPF006434.6E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501199.1725196IPR000315B-box-type zinc finger
SMARTSM003363.4E-95196IPR000315B-box-type zinc finger
PfamPF006431.9E-55385IPR000315B-box-type zinc finger
CDDcd000216.16E-75584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAN RHVRVGLAAP SKIQHCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR IEFPGDKLGP SNELGLPSTE  120
QGDVRKEPAQ PFKLPMIDNH QTNREIAMAA VENNVNNSVK MENELIDLNS RPQRMHGQTS  180
NNQEQGMDML GGNNHESVGV VPDGSFKR
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396501e-96AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence.
GenBankHG9755131e-96HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361997.11e-146PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM51e-79BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0V0HZU51e-146A0A0V0HZU5_SOLCH; Putative salt tolerance-like protein-like
STRINGPGSC0003DMT4000080441e-145(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-82DBB family protein