PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00175.1_g00017.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 592aa    MW: 64805.6 Da    PI: 7.041
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00175.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.3e-11431489563
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  +  l+s++
  Sme2.5_00175.1_g00017.1 431 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDATGLTSQN 489
                              9************************************************9999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-18427491IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898429492IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-11431488No hitNo description
SuperFamilySSF579595.63E-11431486No hitNo description
PfamPF001702.1E-9431489IPR004827Basic-leucine zipper domain
CDDcd147037.51E-24432481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAGDNDEGNS DMVQRLQSSF GTSSSSLPKQ LQPISMNQLD IPQLTTSQFR GQMRQFSPNF  60
GVENSKRVGI PPSHPQMPPI SPYSQIPVTR PGNQQMGMQN FTSAGPSHSR SLSQPAFFSL  120
DSLPPLSPSP YRESPSTSMS DQISADVSMG DQDGSSHSLL PPTPFSRCNS SRAGESLPPR  180
KAHRRSNSDI PFGFSAMMQS SPPLVPLRSP GALERSVPSR DYSGGKPVQL VKRESMWEKG  240
NDNNNNVEGM GERKSEGEVV DDLFSAYMNL DNIDAFNSSG TDEKQGLENR EDLDSRASGT  300
KTNGGDSSDN EATSSVNDSS SGSMQRLGIS SSVEKREGIK RSAVGDIAPT TRHYRSVSMD  360
SFMGKLNFID DSPKLPPSPG PRPGQLSPTN SLDGNSNSFS LEFGNGEFSG AELKKIMANE  420
KLAEIALADP KRAKRILANR QSAARSKERK MRYIAELEHK VQTLQTEATT LSAQLTLLQR  480
DATGLTSQNS ELKFRLQAME QQAQLRDALN EALTAEVQRL KIATAELNAD ASKFQQLSLN  540
PQMFQSQQQQ SNQLNMHQLQ QQQQQQQSSQ PQQQAQAHQQ LNNSTPSKHE SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2394470.0AC239447.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-128j14 map 1, complete sequence.
GenBankBT0145760.0BT014576.1 Lycopersicon esculentum clone 134031F, mRNA sequence.
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230901.10.0probable transcription factor PosF21
RefseqXP_015062011.10.0probable transcription factor PosF21
TrEMBLA0A3Q7ETM70.0A0A3Q7ETM7_SOLLC; Uncharacterized protein
STRINGSolyc01g110480.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-141bZIP family protein